PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_058930844.1 NCBI__GCF_001484605.1:WP_058930844.1 (1165 amino acids)

SeqID: WP_058930844.1 NCBI__GCF_001484605.1:WP_058930844.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_058930844.1 NCBI__GCF_001484605.1:WP_058930844.1
MTHTATEAAGQTDVPQARALAADTITLVRRWLTEASKVPVDASAEQLAGVLKDPNGLDFT
VGFVDGVVRPEDLHVAARNLAALAPKVPAFLPWYMRSAVRLGGTMAPVLPQVVIPIARRV
LREMVGHLIVDATDAKLGPAIAKIRKDGIKLNVNLLGEAVLGEHEASRRLAGTHTLLARP
DVDYVSIKVSSTVAPHSAWAFDEAVEHVVEKLTPLFTKAASFAGAASGAGAATNAKFINL
DMEEYKDLDMTIAVFTRILDKPEFKNLEAGIVLQAYLPDALSAMIRLQDWAAERRANGGA
AIKVRVVKGANLPMEQVESSLHDWPLATWHTKQDSDTNYKRVINYSLHPDRINNVRIGVA
GHNLFDIAFAWLLAKQRGVESGIEFEMLLGMAQGQAEAVKKDVGSLLLYTPVVHPAEFDV
AIAYLIRRLEEGASQDNFMSAVFELSENQVLFEREKQRFLASLDTLDDEVPPANRQQNRS
LPPQPLPRDTFANTPDTDPSLPANRTWGRAILDRVPTSTLGNAAVDAATISDADTLNTVI
ATAVEKGKAWGALTGDQRAEILHRAGDVLEARRADLLEVMASETGKTIDQGDPEVSEAVD
FAHYYAESARKLEKVDGATFVPAKLTVVTPPWNFPVAIPAGSTLAALAAGSAVVIKPAKQ
ARRSGAVMIEALWEAGVPKDVLTMVQLGERELGQQLISHPSVDRVILTGGYETAELFRSF
RKDLPLLAETSGKNAIIVTPSADLDLAAKDVAYSAFGHAGQKCSAASLVILVGSVAKSKR
FHNQLVDAVTSLKVGYPQDPTSQMGPIIEPADGKLLNALTTLGEGETWAVEPKKLDETGR
LWSPGVRYGVRRGSYFHLTEFFGPVLGVMTADTLEEAIAIQNQIEYGLTAGLHSLNPDEL
GTWLDSVQAGNLYVNRGITGAIVQRQPFGGWKKSAVGAGTKAGGPNYLAGLGDWVSADAA
VTLAVTNAGVGRIQNAAAGELQPAEIESLQRSLGSDALAWAHEFGTAKDVSGLSAERNIF
RYRALPVTVRLSEGAPLAHLARTVAAGVLAGSALTVSTAVELPAQLRAVLTGLDITVTVE
SDAGWLASAARLAAAGRLSGARIRLIGGDATALAEATDGRPDLAIYAHAVTEAGRVELLP
FLHEQAISITAHRFGTPNHLSDELI