PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_061531796.1 NCBI__GCF_001584165.1:WP_061531796.1 (1002 amino acids)

SeqID: WP_061531796.1 NCBI__GCF_001584165.1:WP_061531796.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599966: probable ferredoxin[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_061531796.1 NCBI__GCF_001584165.1:WP_061531796.1
MLVKPIHLVPRGGAMPTPLVAQLRRELRGDVLFDKADRGRYATDASIYQIMPIGVVVPRD
QDDLLTVLDIARDNHVPILARGAGTSQCGQTVGEALVIDSSKWLNKVINFDPATRTVTVE
PGIVLDHLNAWLKPHGLWFPVDVSTAAQCTIGGMAGNNSCGSRSIEYGNMVHNVTAIDAV
LADGTQGRFERLDRMPATARMDELVAGLQRIAQRERSEIAERVPKVLRRVGGYNIDIFDC
QNPRAYTDDGVANLAHILVGSEGTLAYSRQLTLALLPLPEHKVLGVVNFPTFYQAMDLTQ
HIVKLGPTAVELVDRTMIDLAMGNPAFKPVIEKALVGQPQAILLVEFSGENLDALLLKLA
QLDELMADLQLPGAVVQMRGAADQKALWEVRKAGLNIMMSMKGDGKPVSFIEDCAVPLEH
LAEYTSQLTEVFHKYGTEGTWYAHASVGTLHVRPILDMRRGGAKDMREIAEAASALVRKY
KGAYSGEHGDGLCRGEWVAWQYGPKINAAFSEIKELFDPENRFNPDKIVRPPKMDDAANF
RFAPGYRELPHAPLLDWSSWNVRRNPLTGEETAPGSGDDRSGGLAKLVEMCNNNGHCRKF
DAGTMCPSYRITKDEKHVTRGRANTLRLALSGQLGSAGLASVEVKEVLDLCVSCKGCKRD
CPTGVDMAKIKIEARAAWAGEHGVSLRDKLIAFMPKYAPYASSVGGFLALADSVPLFASW
LKKRIGIAPQRSLPRFKKAFLGNAKSTSGNADGREVLLFVDTFNNYMEPENARAAQQVLE
AAGYKVHFNALAGEQPLCCGRTYLSAGLVEQAKAEARRTLDALMPLVRRGVAIVGLEPSC
LLSMRDEFVNYGYGDEARQLAQSAYLFEEFLLKEKKEGQLQLDLQALPTNQVLLHGHCHQ
KAFDAFSPVQAVLKWIPHIELATVESSCCGMAGSFGYEAEHYEASIAMAELALLPAVRKA
GNASIVVADGTSCRHQIHDGAGMEALHVARVLALSLGQKKPS