PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_061942328.1 NCBI__GCF_001584185.1:WP_061942328.1 (352 amino acids)

SeqID: WP_061942328.1 NCBI__GCF_001584185.1:WP_061942328.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 1705847: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    Cytoplasmic            0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_061942328.1 NCBI__GCF_001584185.1:WP_061942328.1
MIKTTIVGLMIGMFGLVTHASAQDKGLIGISMPTKSSARWIADGDNMVKVFKEKGYKTDL
QYAEDDIPNQLAQIENMVTKGVKVLVIAAIDGTTLTNALQKAADKGVKIIAYDRLIRNSK
NVDYYATFDNFQVGVLQASYIEKALDLKGGKGPFNIELFGGSADDNNAFFFYNGAMSVLQ
PYIDKGKLVVRSKQTGMDKVSTLRWDGAVAQARMDNLLSAYYGNAHVDAVLSPYDGISIG
ILSSLKGVGYGTPKQPMPVVTGQDAEIPSVKSILRGEQRQTVFKDTRELAKVTAGMVDAE
LSGKTPTVNDTKTYNNGVKVVPSYLLKPVSVDASNWKPVLIGSGYYTESQIK