PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_062056268.1 NCBI__GCF_001401755.1:WP_062056268.1 (804 amino acids)

SeqID: WP_062056268.1 NCBI__GCF_001401755.1:WP_062056268.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598931: homoserine dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.94
    Periplasmic            0.04
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.94

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_062056268.1 NCBI__GCF_001401755.1:WP_062056268.1
MKVLKFGGKSLANGKGIHTVIDIIEDKVKNGEKITVVLSARGNTTNELEEILEKAVKNQS
YQKEFESFKEYQKADFLDIDFSREFETLDKLFEGVSLLGDYSKRIKDQVLSQGEVVSAKL
VTQILKGKNINAKFTDSRDLIITDDQFGDAQPLDKLSKENVINHFQEYNGTTVNIVTGFI
ASNTKNETTTLGRNGSNYTASLLANYLEAEELQNFTHVNGIYTANPDLVPDAQKIEKLSF
TEANELAYFGANILHAKTIIPLIEKNIPLRILNTFNYKNKGTLITAEASEKGIKSLSVLE
HVALINLEGRGLLGKVGVDARIFRALAHKNISVSIISQGSSERGIGFVVEADKAKEAKSV
LEQEFESDFYKRDVSGITIEENVSVISIIGQDLSTFHKPYNALIKNQVIPLLFNNTVTGK
NVSLVVRKEQLHRALNVIHGEIFEIAKKINVAIFGHGLVGGTLINQILKSSNQIEKRKKI
AINIFAVANSKKVLFDQTGIDQNWESEIVEHGVSYTIDDIIQFADKHHLENLIAIDNTAS
QDFTKHYIHLVAHGFDLVSSNKVANTLSFDFYKELRVKLEENQKQYLYETNVGAGLPLID
TIKLLHLSGENITRIKGVFSGSLSYLFNTFSIEKRLFSEVLQEAIDNGFTEPDPREDLCG
NDVGRKLLILARELDLSNEFDDIKIHNLIPEELRAGEAKEFLGRLKELDSVYQKIKEEQK
PDHVLRYIGDLWGDLSQEKGNLDVKLVSVPQSSALGQVKGSDSIFEIYTESYGDQPIVIQ
GAGAGAAVTARGVFGDILRLAEKG