PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_062736417.1 NCBI__GCF_001580365.1:WP_062736417.1 (712 amino acids)

SeqID: WP_062736417.1 NCBI__GCF_001580365.1:WP_062736417.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 131491: PTS system fructose-specific EIIBBC component]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_062736417.1 NCBI__GCF_001580365.1:WP_062736417.1
MSELITPDLVSLDRDLGGDKETVIGQLAALVQRTGRAEQLDGLLADAIARENKTATGIPG
GIAIPHCRSAAVTEPTLVMARLAEGVPWGAKDGPADIVFFIAAPEGADQTHLKLLAKLAR
SLMKKDFVASLRSARSEQEIVRIVDDALGLSPATEDGAAAGATAGSTAAAAVPASVESRP
GTQDAPPAAAEPARSAPAEHAPDAGAPARRRVVAVTACPTGIAHTYMAADGLTYAAEEMG
VDLQVETQGSAGFTKLDPATIAAADAVIFATDVDVRDRSRFAGKPYVVSPVKRGIDEPKV
MIEEALANAENPNAKRVQGAAGGADEAEASGGREGWGTRIRKAVMTGVSYMIPFVAAGGL
LMAFGFMVAGADIANIADDVLTGSTIWNLGEFTLAQYIGAVLFKMGNLAMSLLVPALAGY
IAYGLADRPGIAPGFAAGLVANFMGAGFLGGIVGGLLAGLAAYWLAQPRLPRWLGSLMPV
VIIPLLATIFSAGLLLLVLGGPIATFMAWLTEVLNGMTGASALALGAILGLMMGADLGGP
INKVAYTFAAAGLGAATAVNTAPQEIMAAVIAAGMVPPLAMALASTVAKRYFTVAEQENG
KAAWLLGASFISEGAIPFAAADPLRVLPASMVGGAVAGAISMATGVTSAAPHGGVWILPV
IGNPLMFLLSVVVGTVVTAGIVVALKHVGGAHGRVADATRSREDAAAVPTTA