PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_066328166.1 NCBI__GCF_900100165.1:WP_066328166.1 (1101 amino acids)

SeqID: WP_066328166.1 NCBI__GCF_900100165.1:WP_066328166.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Periplasmic            9.83
    Extracellular          0.14
    Cytoplasmic            0.01
    CytoplasmicMembrane    0.01
    OuterMembrane          0.01
  Final Prediction:
    Periplasmic            9.83

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_066328166.1 NCBI__GCF_900100165.1:WP_066328166.1
MFKSIHNFLKFRFSIVCCLFGIGISQAQLVTGEPAGVPRIKEKYVDTPWENPMITSMNRE
PARATAYSYATVADALEGNRNKSRIKVLNGDWDFKFAKNFQEAPQDFYKNGVKGWDKIAV
PSNWEMKGYGMAIYKSAVYSFRPVNPPFVPQDDNPVGSYQRKFTVPENWDGMTVSLHFGG
VSSAFQVWINGEFVGYGEDSCNSSEFNITPYLKKGENILSVRVFRYSDGSYLEDQDHWRL
SGIQREVYIMAEPKLRIADFFYQTKLDKKYQDAVFQLRPRLDNQTGDTIKNHTFEVQLYD
AQNKPLFEKDLSRKAIDIISEVSPRLDKVRFGFFQETIKNPLKWSAEKPNLYTLVMILKN
PDGSISEVKTCKLGFRSIEFSKENGKMLINGKETYVYGVNHHGHHPSRGEAVNHQDLEED
VKLMKKYNFNFVRTSHFPEDPYFYELCDKYGLMVMDEANLETHGLGGFLSNDQQWTHAYL
ERMTRMVHRDKNHPSVVMWSLGNEAGKGPNHAAMAGWTHDYDITRPVHYEPAQGNPRLDG
YIDPLDPRYPKTVDHSHRYENPQDEPYVDVVSRFYPGVFTPKFLVDQKKDTRPILFVEYS
HSMGNSTGNLKELWDEFRNTPRVIGGCIWDLKDQGLLRKDAKTGQEYLGYGGDFGEKKHD
GNFNINGMVSADGRAKAAMYENKWIYQPAVSSLSTDFKLNIHNRQVVQNLRDFIPVIQIL
ENGNLIKQFVLQPIDIPAGGDYVLDVKKYLPNRKKDSEYFLNIEFQLAKDEFWASKGYAV
ATDQFLLQKKTEVVLAEAKQKSNLQETKEAYAINGRDFSIKINKANGALSSYVYKGKEQI
KADLLPNFTRALTDNDRKGWKPHKLLKQWYLAKPMLKNIKMEQSAGDIKISSDYEIIKDS
AAVKVVYNINANGIVKVNYQLNANPKLPNIPRIGMQLGINQDFGQISWYGKGELENYCDR
SFGFTVGRYSLPIDKFIEPYVMPQENANRTEVRWMAFTNPTKSSGLIVVNEDKVLNMSAW
PYTQQNLDDAKHTYDLVNPGFLTVNVDLKQMGVGGNDSWSPVSAPMEKYQIPSGDYQYSF
YLMPFSDAKNGLETNLKKFKY