PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_066328323.1 NCBI__GCF_900100165.1:WP_066328323.1 (744 amino acids)

SeqID: WP_066328323.1 NCBI__GCF_900100165.1:WP_066328323.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141276: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_066328323.1 NCBI__GCF_900100165.1:WP_066328323.1
MKNKIIRLSVFSILLFTGLNANSQTVSNMRLLNARPIEKPLGSEFDTNIEELISKMTLEE
KIGMLHGNSMFANGGVPRLGIPELKMADGPLGVREEISRDSWKPAGLDNDFATYYPASGA
LAATWNTRMASLFGNSVGQELRARDKDMLLSPAINIVRTPLGGRTYEYMTEDPFLNKKMA
VPLVVSLQDNDVMACVKHFAANNQETNRDFVDVQIDERTLREIYLPTFEATIKEGNVYSV
MGAYNKFRGEYLCENDYMLNTILRDEWGFKGVVVSDWAAVHSTVKSLQNGLDIEMGSKKP
FNEYFLADKLIAAVKAGEVSEKEIDKHVKRILHVLFQVKAMDGKDRVKGSLATESHYQDA
YEIASEAVVLLKNNNNALPLKLDGIKSIAVIGNNATKKNALGGFGAGVKTKREITPLEGL
KNRLPASIKINYAEGYLERYEKKNKGNLGNITSKGPVTIDQLDDAKLQEALEAVKNSGAA
IIFAGSNRDYETEASDRKDLKLPFGQEELIKKVLAINPKTIVVMIAGAPFEMEEISKKTN
ALVWSWFNGSEGGNALADVLLGKVNPSGKLPWTMPKKLMDSPAHATNSFPGDKTVNYAEG
ILVGYRWFDTKKISPMYPFGYGLSYTNFTFGKAFSDKEIYNNDEVITIAVDLKNTGKVDG
KEVVQLYSSKTDSKIDRAAQELKGFTKILVKAGATQKVIIKVPVKELAYYDVANKKWTVE
PGKYKLKLGNSSRDIKKEIDVIIK