PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_066328676.1 NCBI__GCF_900100165.1:WP_066328676.1 (803 amino acids)

SeqID: WP_066328676.1 NCBI__GCF_900100165.1:WP_066328676.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            OuterMembrane                 [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598931: homoserine dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            6.58
    OuterMembrane          2.25
    Periplasmic            1.02
    Extracellular          0.09
    CytoplasmicMembrane    0.06
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_066328676.1 NCBI__GCF_900100165.1:WP_066328676.1
MKILKFGGKSLSNGEGINKVVSIITDKVNQGEKIAIVVSARGNATDELEEILAVASKNAD
YKSLLEQFKKYQQDVYANVDLSEEFAVLDKLFEGVSLIGDYSSKIKDQILSIGELLSAKL
LTAILVEKGVNARFADSRTFLKTDSKFGDAQPLEQVSKKNVIKYFKDNDDAVNVVTGFIG
SNINNVTTTLGRNGSNYTASLLANYLDAKELQNYTHVDGIYTANPDLVADAKKIDHLTFN
EANELANFGATILHAKTIIPLLEKNIPLRILNTFNHENEGTLITATSKSGGIKTLSVLED
LALVNLEGRGLLGKTGVDARIFKVMGDNNISVSIISQGSSERGIGLVVAESQATKAMIEL
EKEFENDFYSKDVNKISVTDDVSVISIIGQDLSTFYRPYTALIKNKIIPILFNNTVTGKN
VSLVVKKSELNKALNVIHGEIFGVSKKINIAVFGHGLVGGTLINQILESAKAIEKRKDIK
LNIFAIANSKNVLLNKDGVSPNWVNEIQTNGFAYTIKDVIAYANENHLENLIAVDNTASA
AFVENYIPLVENGFDLISSNKVANTLSYGFYKELRKVLAENQKNYLYETNVGAGLPLIDT
IKLLHLSGENITKIKGVFSGTLSYLFNNFSAKDAPFSDILKEAIDNGYTEPDPREDLCGN
DVGRKLLILARELDLQNEFEEIAIQNLIPEHLREGSAADFLTKLKEFDPIYTKIKEEQKP
NHVLRYIGELSGDLQNDKGILEVKLVSVPSDTALGGLKGSDSFFEIYTESYGDRPIVIQG
AGAGSAVTARGVFGDILRLSDKG