PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_068170823.1 NCBI__GCF_001592305.1:WP_068170823.1 (428 amino acids)

SeqID: WP_068170823.1 NCBI__GCF_001592305.1:WP_068170823.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 39932236: Taurine--pyruvate aminotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_068170823.1 NCBI__GCF_001592305.1:WP_068170823.1
MNDLKTDHTNAAWHQRRLDATPRGVGVMGDFFIDHAKNAELWDIEGRRFIDFAGGIAVLN
TGHVHPKVQAAIAAQLQRFTHSCYQVVPYAEYVSLAERINAIVPIEGKAKTAFFSTGAEA
IENAIKIARSSTGRSGVIAFGGAFHGRSLFAVSLTGKVQPYKAGFGPFPPEIYHVPFPAE
GASLDETKRAMDHVFKCDIEPSRVAAIVFEPVQGEGGFNPIQKDAVLWLRALCDQHGILL
IADEVQTGFARTGRMFAMEHYGVSPDLMTMAKSMAGGTTLSAVSGKAAIMDGPAPGGLGG
TYAGNPLAIAASHAVLDVMAEEKLPERAQRLGDQLVAHLRAAKAKYPRIGEVRGLGAMVA
CEFVDAAGAPDADTTKQVQAAALKRGLLLLTCGVYGNVIRYLFPLTIEDSVFAEALGVLD
AAMAETLA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory