PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_068221739.1 NCBI__GCF_001592965.1:WP_068221739.1 (877 amino acids)

SeqID: WP_068221739.1 NCBI__GCF_001592965.1:WP_068221739.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 728965: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            5.41
    Periplasmic            4.48
    CytoplasmicMembrane    0.06
    Extracellular          0.05
    OuterMembrane          0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_068221739.1 NCBI__GCF_001592965.1:WP_068221739.1
MLITLFAFSPALAQQYPYQNAKLPVEERVKDLLSRMSLEEKVRQMDMYDGAKLKENEALK
RSAVETTFSDGLGVGSIHDLYPRNAKDINDLQKYVIEHNRWGIPAIIFCEFLHGYTGEGS
TAFPMNIGLGATWDADLMKRVGEVIGMEGRAHGVHFGLGPNLDLGREPRWGRIAETLGED
THLSATLGTALVQGIQGDDLTKNTAMVAEPKHFAVHGSPEAGGNSGPILYGERSVRTDFL
PVFRKAFQEGGALGTMAAYSEIDGVPMASNQHLLTEILRNEWGFKGIVVSDLGAIKFLQT
SHRSTASPRESIKAAISAGIDMQFYDFPNKQYQETIIDLVKSGEMDVAHVDRAASGVLRL
KFMLGLFENPYTAQALIDDRHHSEGNQQVALEAALKSMVLLKNEDNLLPLNKGMKKVAVL
GPLANESVLGGYSVKGAKAITVFDGVKQYLGSTATVQYEVGIPLIYKGQTVPSANLLTPD
KSKKGLKATFFNNRDLEGEPVLTRIDEQVGFEWEESPGEGVNADHFSIRWEGWLVPDTDF
EGWVGVSSDDGVRLEVDGQMVIDNWRKGATNIETAPMSFKAGQEYKIVLDMWEGGYGAKA
FLLWNKEKPDYSKAVNLAKSSEVAIVVLGETPELVEENKDVSSLDLYGLQEDFLNEILAT
GTPVVAVVYNGRPLSITGLQQKVPAILEAWFPGEKGGMAVAQTLFGDANPSGKLPVTFPR
NVGQLPMYYSSKPTRNHRYVDEKITSLYPFGYGLSYTTFEYKNLKIETVGDAQVTVTVEL
TNTGDRAGEEVAQLYVTDVYSSVTTAVKSLKAFERVALQPGESKLITFQLQPEDLALWNR
EMKRVVEAGQFRVQVGGNSAEGLRESFEVKEEIQLGN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory