PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_069331338.1 NCBI__GCF_003046325.1:WP_069331338.1 (529 amino acids)

SeqID: WP_069331338.1 NCBI__GCF_003046325.1:WP_069331338.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Periplasmic                   [matched PS01040: SBP_BACTERIAL_5 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 585619: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_069331338.1 NCBI__GCF_003046325.1:WP_069331338.1
MTLFSLRAGACALALMAGTAGMAAAQVTIVRGNDTDPATLDHHLTSTVAESRIMNDLYEG
LVVQDAQAKVVPGVAESWEISEDGLTYTFKLRDDAKWSNGDPVVAEDFVFALRRIMTPAT
AAIYANILYPIANAEAVATGGKQPEELGVEAVDEHTLKFTLNAPTPYFLELLTHQSSLPM
HRATVEAEGSNFTKPGVMVTNGAYKLVSFAPNDRIVMEKNEHFHDAANVAIDRVEWVPFE
DRSACLRRFEADEVQMCTDVPAEQMAYMRENLKDELHVAPYLGTYYLPVKGADGSPLKDK
RVRQAISMVLDRDFIAEEVWQETMLPGYSMVPPGISNYVETPPALDYADEDLLDREDKAK
ALLEEAGVAEGSLTVQLSYNSSENHRNTMTAIADMLKNIGINATLNEMEGTNYFNYLKEG
GAFDIVRAGWIGDYSDPQNFLFLFEGGVPFNYPRWENADYDALMDKAAVTQDLGQRAQIM
ADAETILLDEVPAIPLLTYSSRALVSGKVQGYEDNLPDVHLTRWLSLAE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory