PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_069333144.1 NCBI__GCF_003046325.1:WP_069333144.1 (331 amino acids)

SeqID: WP_069333144.1 NCBI__GCF_003046325.1:WP_069333144.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2492549: Oligopeptide transport ATP-binding protein oppF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.59
    Cytoplasmic            0.41
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane (This protein may have multiple localization sites.) 9.59

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_069333144.1 NCBI__GCF_003046325.1:WP_069333144.1
MTSVPMIAAHELSKVFPLERGLWSALSRKLSGRPPRRVQAVDRVSFEVAPGETVGIVGES
GCGKSTLAKMLAGLSGTNGGELLLRGRPLAEVMSDPRQALKVQMIFQDPQSSLNARMKVV
DIVGEAPVVHGLIPRAEKEARVRAMLERVGLGPEALHRYPHQFSGGQRQRIGIARALAVE
PELLICDESVAALDVSVQAQIINLLMELRRDLGLTMLFISHDLSVIRHICDRVIVMYLGR
AVEIAPTDALFADPRHPYTRMLLAGMPRISTERRAFLEVAGEIPSPLAPPAGCHFHPRCQ
FRTEECLAQRPPLDPVDARRSAACLRWREIG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory