PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_076476938.1 NCBI__GCF_900156495.1:WP_076476938.1 (620 amino acids)

SeqID: WP_076476938.1 NCBI__GCF_900156495.1:WP_076476938.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 62297827: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_076476938.1 NCBI__GCF_900156495.1:WP_076476938.1
MCGIVGYVGHGDALEIVVEALRRMEYRGYDSAGVAILDGAGGMAVEKKAGRLENLDKELA
TVGREHFAGSTGMGHTRWATHGRPTDRNAHPQVSTDGKIAVVHNGIIENFAGLRDEVEAA
GIEFSSDTDTETAVHLLYLEYTSGEHAGDFEASAYAVLQRLEGAFTLVFVHADHPDKIIA
ARRSTPLVVGVGTDAMFVASDVAAFIEHTRDAVELGQDQVVVITADTYRITDFDGNEEQG
TPFHINWDLAAAEKGGHDFFMLKEIAEQPQALADTLLGHFENGRVVLDEQRISDQDLRDV
DKVFVVACGTAYHAGLIAKYAIEHWTRLPVEVELASEFRYRDPVLDRSTLVVAISQSGET
ADTLEAVRHAKEQKARVLAICNTNGAQIPRESDAVLYTHAGPEIGVASTKCFLAQIVATY
LVGLALAQARGTKYSDEVAREYLALEQMTDAVAQVLETVEPVRALARDLSSTDTVLFLGR
HVGYPVALEGALKLKELAYIHAEGFAAGELKHGPIALIEDGVPVIVVMPSPVGRAVLHSK
MVSNIREIQARGATTIVIAEDGDIAAAALADHLIVIPRVPTLLQPLVSTVPLQAFAAAVA
QARGYDVDKPRNLAKSVTVE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory