PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_076477611.1 NCBI__GCF_900156495.1:WP_076477611.1 (684 amino acids)

SeqID: WP_076477611.1 NCBI__GCF_900156495.1:WP_076477611.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1708300: Heat-responsive suppressor hrsA]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_076477611.1 NCBI__GCF_900156495.1:WP_076477611.1
MSENIITTDLVALDVDAGAEKSEVIDFLVERLAADGRVHDTVAVNEAAMAREAQSATGLP
GGIAIPHCRTEGVSAAGLSFARLAPAVDFGAKDGPADLVFLIAAPASGGSQHMKLLSSLA
RALVRPDFVTSLRNAKSADEVVALVDQAINPAPATSPAAAAVPAASGGAPAKAATRLVAI
TACPTGIAHTYMAADALKFAAERAGVDLVVETQGSSANTPTDPSVIRDADAVIFATDVGV
KNRDRFAGKPVIASGVKRAINEPDVMIAEAVAAAGDPDASRVGGDTAAAATASTAGGDLG
WGTRLRQVLLTGVSYMIPFVAAGGLLIALGFLLGGYKIALAPPGSADGTEAIGKTIALSN
SLWNLPSGGLAQYLGAICFTLGGLAFSFLVPALAGYIAYAIADRPGLAPGFTAGAVAVFV
GAGFIGGLVGGLLGGFVALWVGRIPLPAWARGLMPVVIIPLLATLATGGIMFLFLGRPLA
WVNTSLTDWLNGLSGTSAIILGIILGLMMCFDLGGPVNKAAYAFAVQGLSSGDPAQLRIM
AAVMAAGMVPPLALALATALRPRLFTEPERENGKAAWLLGASFISEGAIPFAAVDPLRVI
PSMMAGGAVTGALVMAFDVTLRAPHGGIFVFFAMGNVFGFLLSLLVGMVISATLVLALKQ
MRVHHQARTEQQSEVTATTHTVAA