PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_076477790.1 NCBI__GCF_900156495.1:WP_076477790.1 (405 amino acids)

SeqID: WP_076477790.1 NCBI__GCF_900156495.1:WP_076477790.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 54041585: Phosphoglycerate kinase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_076477790.1 NCBI__GCF_900156495.1:WP_076477790.1
MASVPTLTDLLADGVSGRGVLVRSDLNVPLDDHGQITDPGRILASVPTLTALLDAGAKVV
VTAHLGRPKGAPEAKYSLAPVAERLSAELGRNVQLAGDVVGQDALARSEGLTDGDILLVE
NVRFDPRETSKDEAERTALAEALVELVGEDGAFVSDGFGVVHRKQASVYDVAKLLPHYAG
ELVAAEVEVLTKLTDEVERPFAVVLGGSKVSDKIGVIEALAPKVDTLVIGGGMAFTFLAA
EGLNVGDSLLQQDQIEVCKGLLERFGDVIHLPVDVVVASAFAADAESKVVPAQEIPDGWM
GLDIGPESVKRFAAVLSGAKTIFWNGPSGVFEFAKFADGTRGVAEAIIETTRHGAFTVVG
GGDSAAAVRTLGLPEDGFSHISTGGGASLEYLEGKDLPGLQILES

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory