PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_076948421.1 NCBI__GCF_002893965.1:WP_076948421.1 (1151 amino acids)

SeqID: WP_076948421.1 NCBI__GCF_002893965.1:WP_076948421.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Extracellular          0.26
    Periplasmic            0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_076948421.1 NCBI__GCF_002893965.1:WP_076948421.1
MTELVSGVAQAKPYDLDDRCRSGSGPVLLTGVQAIARGFVEQHVRDIRAGKRIATFVSGY
QGSPLGGVDKMLHGMPKVLAEHDITFIPGFNEELAATAVWGSQTDLPAGTATHDGVTGVW
YGKGPGVDRATDTIRHANMYGVNPKGGVVLLVGDDPASKSSTVPAVSERSLAAMGVPVLF
PRNAEEIITMGMHAVALSRVSGCVVALKIVADVADGAWTIDGSIADFDIVVPEVQFEGKP
FVYKQRQMAAPPDSVIAEADLYGPRWDLVHAYGTANNLDVIEVNPSGAKIGIAATGTTFD
SVRQALADLGVDDAALHRAGIRLLRIGMCYPVVGEKIKEFAEGLEQIVVVEDKTAFIEAQ
IREVLYGTDDAPRIIGKRDGQGRLLMPASGELTAGRLLAPLRRVLKPHVELKRTLPAPLS
LNVLSAKRTAYFCSGCPHNRSTAIPEGSIGGGGIGCHTLVTMSGREDSAVTGLTQMGGEG
SQWIGQAPFTDVPHLFQNIGDGTFFHSGQLAVQACIAAGVNITYKLLYNEVVAMTGAQDA
EGALSVAQLSHKLTTEGVKQIIICADEPSRHNKRALAKGTKLWHRDRLDEAQKELREIKG
VTVLIYDQHCAADARRQRKRGTLPTRNTRVVINEAVCEGCGDCGVKSNCLSVQPVDTEYG
RKTKIDQTSCNTDYTCMDGDCPSFVTVELVPGKKAPKAARPVPPVVADPDFGPLTSTQNV
FLAGIGGTGIVTVNQVLATAALRAGLEVESLDQIGLSQKAGPVVSHLRFSSSALEPSNRL
TPGSADCIVAFDLLTATDNKNLDYGNAEKTVSIASTSQTPTGDMVYDKAVRYPEETSLLA
RLDKVSRTLRSFDALAAAQELFGNTAAANFLLIGAAYQSGGLRLPAEAIEEAIGINGVAV
DANIAAFRWGRAAIADTAAFSAVTTPAKSVREPVVAPAHMFAGTTFTGETLRLVELRAAQ
LIEFQSVKIAQRYIDQVQAVWTAERAATERTDFSEAVARGLFKFTAYKDEYEVARMLVDP
AFIEDVKSQVPAGENLTYKLHPPILRVMGRKKKIGLGPKSHVALKVLAKGKKLRGTKLDP
FGYMHVRKVERELLAEYEAMIADLSRTLATDGYDRAVEIAALPDVVRGYEDIKLGNIELY
KTRLRELGVGE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory