PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_077243567.1 NCBI__GCF_001995255.1:WP_077243567.1 (1263 amino acids)

SeqID: WP_077243567.1 NCBI__GCF_001995255.1:WP_077243567.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597040: methionine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_077243567.1 NCBI__GCF_001995255.1:WP_077243567.1
MTATRQDIENALKERILILDGGMGTTIQLYELGEADYRGERFKDWESDLKGNNDLLSLTR
PDIIEQIHNDYLEAGADIIEANTFNGTRIAMADYHMEDLVPELNRESAKLARKAADAWTA
KTPDKPRFVAGILGPTNRTASISPDVNDPGARNVDFDTLVAAYKEAAEALIEGGVDLLLI
ETVFDTLNAKAAIFAVKTLEDELGKDLPIMISGTITDASGRTLSGQTTEAFWNSVRHANP
VSIGLNCALGAKEMRQYVEELSRIADTHVSAHPNAGLPNEFGDYDESPEQMAADVGPWAE
QGMLNIIGGCCGTLPEHIRAMREAVEKFPPRKVPEVSPACRLSGLEPCNITDDSLFVNVG
ERTNVTGSRKFLRLIQNEEYDVALEVALNQVEGGAQIIDVNMDEGMLESQDAMVRFLNLL
AGEPDIARVPVMIDSSKFEIIEAGLKCVQGKPVVNSISMKEGEENFIKQAELCRRYGAAI
VVMAFDEDGQADNEQRRVEICTRAYKLLTEKVGFPAEDIIFDPNIFAVATGIEEHNNYGV
DFIEATRRIKNDLPHALISGGVSNVSFSFRGNEPVREAIHAVFLYHAIKAGMDMGIVNAG
QLAVYDDIDEKLKEAVEDVVLNRRDDATDRLLELSEEYKGQGGGKKEENLEWREWEVSKR
LEHSLVKGIDTYVVDDTEEARQAYDRPIQVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSA
RVMKKAVAHLIPYIEAEKTGTENNGKILMATVKGDVHDIGKNIVGVVLQCNNFEVIDIGV
MQPGAEILKAAKEHDVDVIGLSGLITPSLEEMANFAADLEREGMTTPLMIGGATTSRAHT
AVKIEPNYSGPVVWVKDASRAVGVAQSLISPELRENYAAEIREEYEKLRVQNAGRKKKVQ
WLSLEKARANKPEIDWSAYAPAKPKALETEDLPGEPTVLHPHGDGSVLLRFDDFDLNKVK
EYIDWTPFFHSWQLHAAYPRILEDEKVGEEARKLFKDGQEMLQRMIDEKWVTCRGVVGFF
PANSVDHDDIEVYTDENRSQVLKKLHHLRQQTEKRRGQPSHSLADFVMPKEAGGPDYIGA
FAVSAGGDVDAKAEEYEKANDDYHAILVKSLADRLAEAFAECMHEYVRKYYWGYVADEQL
ENEDLIEEKYQGIRPAPGYPACPEHTEKATLWELLQAEENADMTLTESYAMLPVSAVSGW
YFAHPESRYFGLGKVNRDQVEDYAKRKGMSFEEAERWLAPNIGYDDSDEAKAEAAAEREA
RSA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory