PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_084200258.1 NCBI__GCF_002869505.1:WP_084200258.1 (658 amino acids)

SeqID: WP_084200258.1 NCBI__GCF_002869505.1:WP_084200258.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_084200258.1 NCBI__GCF_002869505.1:WP_084200258.1
MSKITKLLIANRGEIAVRVIRTARDMGYRTVAVYSEADANALHVSEADQAVCIGPAAVNE
SYLVADNILKAARLTGADAIHPGYGFLSENADFSRACEDAGIVFIGPRPDAIELMGSKRL
SKIAMIEAGVPCIPGYQDADQSDDTLLAKAADIGFPLMVKASAGGGGRGMRLVFEARELA
EQIRTARSEAESAFGSGELILERAVLEPRHVEIQVFADEHGNAVYLGERDCSIQRRHQKV
VEEAPSPFVDPQLRQRMGEAAVNAAKACNYRGAGTVEFLVDKDKNFYFLEMNTRLQVEHP
VTELITGQDLVAWQLKVASGEQLPLTQDEVSLSGHAVEVRLYAEDPRNNFMPQTGTVRLW
EYPERAGLRMDHGIQQGQEVSPFYDPMIAKVIAYGSDRAEAIRRLASAVQDTQLLGMNNN
KLFLQNVLRHEVFAQGEATTAFIEQHFSADISMDQKKPRQATLARAALLFQAQATAAGPG
SDASWHNPAAAATTYQLAFDGQAQAIAITEGNGSYEVAVGEERHSLTLVALSDSECVYID
NGVRESMRFAFAGNTLYLDDGTGHFIIENVTYQPAAAAGGAGSGQLKASMDGAIVDVLVT
EGDTVEAGQTLVVLEAMKMEHALKAGISGIVTAISCETGQQVKSKQLLATIEGEQSDD