PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_085636903.1 NCBI__GCF_002115805.1:WP_085636903.1 (582 amino acids)

SeqID: WP_085636903.1 NCBI__GCF_002115805.1:WP_085636903.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506182: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.82
    Cytoplasmic            0.15
    Periplasmic            0.01
    Extracellular          0.01
    OuterMembrane          0.01
  Final Prediction:
    CytoplasmicMembrane    9.82

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_085636903.1 NCBI__GCF_002115805.1:WP_085636903.1
MTQDRVSLASGVGAVSDASGLPNTLTEGDDPWGHARSLIDGWKGGINIAHEALDRHVADG
HGAQIAIKWLGKDGSTQDLTYTDLTELASRFANVLVDHGLRKGDSVFALMGRVPELYAAA
LGALKAGLIFTPLFSAFGPEPIRTRMEIGKANVLVTTASIYKRKISKWRDEIPTLKLVLI
VGDDAPEDCIALGPSMASAATAFETVRTAPEDPALIHFTSGTTGKPKGAVHVHNAVIYHA
FSGNYALRLSPGTIYWCTADPGWVTGTTYGIISPLVNRVTMLVDEAEFDIDRWYGTIEKE
RVEVWYSAPTAIRMMMRAGNATAAKYDFSSLVFLASVGEPLNPEAVIWSKEVFGQPFHDN
WWQTETGGIMIANCPGAEVRPGSMGRPLPGIEAAIVTQANDGMVELGDGEIGELALRPGW
PSMMRAYLNEEARYQKCFRDGWYLSGDLAMRDKDGYFWFVGRADDLIKTSGHLIGPFEVE
SALIEHEAVAEAGVIGVPDETAGELVKAYVTLNPGFQPDDDLEQSIRGHARKKLGPAVAP
REIVFRKTLPKTRSGKIMRRLLKARELGLPEGDISTLETDET