PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_085640383.1 NCBI__GCF_002115805.1:WP_085640383.1 (1140 amino acids)

SeqID: WP_085640383.1 NCBI__GCF_002115805.1:WP_085640383.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_085640383.1 NCBI__GCF_002115805.1:WP_085640383.1
MPRDEMPNLRPLIDDNTYADEALKVDSLRATAQLTQTDRDAIKARATKLVTEIREDSRPG
LMEVFLSEYGLSTEEGIALMCLAEALLRVPDAATIDALIEDKIAPSNWASHLGESTSPLV
NASTWALMLTGKVLKDEQPGPVGHLRGAIKRLGEPVIRTAVGRAMKEMGAQFVLGETIQS
AMKRAARMEAKGYTYSYDMLGEAARTETDARRYHLSYSRAISAIAEAAKSKDIRDNPGIS
VKLSALHPRYEEAQQDTVMNEVVPRLRTLAQLARSAGIGLNIDAEEADRLSVSLDVIETV
LSEPSLKGWDGFGVVVQAYGPRAGHVIDWLYNLAERLDRKIMVRLVKGAYWDTEIKRAQV
AGLPAFPVFTAKHHTDISYIANARKLLGMTDRIYPQFATHNAHTVAAILHMAEDRTLFEF
QRLHGMGEALHDIVKDDEGTRCRIYAPVGAHRDLLAYLVRRLLENGANSSFVNQIVDTDV
PAAEVAADPFDTQAVPKLPTGPELFAPERPNSKGWDLTHRPTRAAIEAARKPFSGVQWTA
TPLVAGDAETGATDPVINPARPGDTVGSVTWATSGTVATACTVATPWNADAAERAEVLNK
AADLYEAHYGELFALLAREAGKSLLDAVAELREAVDFLRYYAARAEGPDPQGVFACISPW
NFPLAIFTGQIAAALTTGNAVLAKPAEQTPLIAYRAVQLLHEAGVPTTALQLLPGAGDVG
AALTSNPAVKGVAFTGSTETAQIIHRSMAKHLAPGAPLIAETGGLNAMIVDSTALPEQAV
QAIVESAFQSAGQRCSALRCLYVQEDIAESFVEMLTGAMDALVIGDPWIYGTDVGPAIDA
EARDGIISYVDAAEVEGRVLHRLPLPGGGTFVPPTLIRVSGIADLEREIFGPVLHIATFK
SKDIDTVIDAINGTDYGLTFGLQTRIDDRVQHVSEQIKAGNIYVNRNQIGAIVGSQPFGG
EGLSGTGPKAGGPNYLARFRRHPADTAGDVWPSQDSKDRLTKALTSAGGKASATKTTLPG
PTGESNVLTAMARGPILCLGPGPEAAKAQARAVEALGGIAVKAEGGIAPDWLADLESEGA
IWWGDDETARALRTELASRKGPILPLITGMPDKGHACHERHVCVDTTASGGNAQLLSGAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory