Running PSORTb v3.0 on WP_086005351.1 NCBI__GCF_000359745.1:WP_086005351.1 (477 amino acids)
SeqID: WP_086005351.1 NCBI__GCF_000359745.1:WP_086005351.1 Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- Unknown [No internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- CytoplasmicMembrane [matched 7404442: Ribose import ATP-binding protein rbsA] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 9.99 Cytoplasmic 0.01 Periplasmic 0.00 Extracellular 0.00 OuterMembrane 0.00 Final Prediction: CytoplasmicMembrane 9.99 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in the ENIGMA genome browser
>WP_086005351.1 NCBI__GCF_000359745.1:WP_086005351.1 MNLKVRRGRVHTLLGENGAGKSTLMKILAGVYKPTSGEILLAGKAYQPQNPRDARGHGIS IVFQELSLCRNLSVAQNIFASHEPSRFGFVRDRVLVAKAEALIEDLGLPVNVHAKVGDLS IAQRQLVEIAKGLSLPADVIILDEPTSSLSDSEAEILFSIIERLKARGKAIIYISHRMEE IMRLSDDITVIRDGEYVTTTEKSETSIDKLIALMVGREMQDIYPPRVAPRPAESTAPVLA TKNLTVPGKFHEVSIDVKPGEVVGLFGLIGSGRSDIMKALFGMERPEGQIFLDGKPLTLA SPSDAIRHGIAFVTENRKEEGLVLAHSVERNVNMVALKQLAGPFGLMRGSAERAAAKAEV LRLAIKAASIDTSTGSLSGGNQQKIVLAKWLQIRPRVLILDEPTRGVDVGAKFEIYRIIR ELAAEGAAILMVSSELPEVLGLSDRVAVMHNRSLAAVLDAEGLTPETVMTYAAGMHA
Lawrence Berkeley National Laboratory