PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_086508286.1 NCBI__GCF_002151265.1:WP_086508286.1 (656 amino acids)

SeqID: WP_086508286.1 NCBI__GCF_002151265.1:WP_086508286.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_086508286.1 NCBI__GCF_002151265.1:WP_086508286.1
MPLNLAQQLIRDHLVDGEMTPGSEIALRIDQALLQDVLGTLVMLELEAMGLDRVKTQPSV
QYIDHGLVQADNLNAETYLFLKSACERFGVWYSGPGNGISHPVHMEHFGIPGQSIVGCDS
HTTAAGSLGMLAIGAGGIEVAMAMAGEPLYLSMPEIWGIRLAGSLPDWVSAKDAVLELLR
RHGVAGAKNTIIEYHGPGLANLSAMDRHVLANMGTEMGATATVFPSDEEARRFLAARGRE
ADWKPLAAEPGCTYDREEVLDLSSLEPLIALPSSPDKVVPVREVVGEPLHQAYIGSSGNP
GYRDFAVVAEMVRGRTVADGVSLDINPSSRQVLATLIRDGYLADLVASGARLHQTGCNGC
IGMGQAPAVGRNSLRTVPRNFPGRSGTREDSVFLCSPETAAASALAGSIADPRSLDMAYP
RIAEPAQMVVNRDVFVAPLPLAEARLKPLQKTDNTPALPELAALPDTLEVPVLLVTGDNV
STDDIMPAGQRVMPYWSSVYASAPFTFEAVDADYARRAENTRTLGGHAIVGGHNYGQGSS
RENAALVPRYLGLQAVLAKSFARIHWQNLICFGALPLSFIDAQDYDRLEQGDSLVIHDLH
AQLAAGAELTAEVVGKGAFRLHHGLTPRQRELLACGGVINHIRRGKGASAGAAGIS