PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_086511579.1 NCBI__GCF_002151265.1:WP_086511579.1 (574 amino acids)

SeqID: WP_086511579.1 NCBI__GCF_002151265.1:WP_086511579.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_086511579.1 NCBI__GCF_002151265.1:WP_086511579.1
MELLSGADMIARFLQDEGVEYIYGYPGGAALHIYDALFRQDKVKHILVRHEQAATHAADG
YARASGKPGVVLVTSGPGATNAVTGIATAYMDSIPMVVLCGQVMSHLIGDDAFQETDIIG
VTRPIVKHSFSIKHPTEIPEVLKKAFYLASTGRPGPVVVDIPKDMTAPTERYEYVYPKKV
KLRSYNPVARGHTGQIKKAVEMMLKAKRPVFYTGGGVITGRACEGLTDLVKRLGYPITTT
LMGIGAYPQSDRQCLGWLGMHGSYESNMAMHHADLIIAIGARFDDRVTNNTSKFCPTAKI
IHVDIDPSSVSKTVRADVPIVGPAASVIDEMISLVQGKEIAHPEALTEWWQKIDGWREER
RGKLYEPSKPGEQLKPQEVIEALCEITRGEAYVTTDVGQHQMFAAQYYKFDKPNRFITSG
GLGTMGFGFPAAMGIKQNFPEETVVCVTGEGSFQMMMQELSTCKQFGGGVKIINLNNASL
GMVRQWQDLNYKSRHAHSYMESLPDFAKLIEAYGFTALRVETMDELRPALERTFADKHEL
VFVDVIVDPREHVYPMQVPLGSMRDMLLSKTERT

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory