PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_088754803.1 NCBI__GCF_002213425.1:WP_088754803.1 (380 amino acids)

SeqID: WP_088754803.1 NCBI__GCF_002213425.1:WP_088754803.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 12230875: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    OuterMembrane          0.06
    CytoplasmicMembrane    0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_088754803.1 NCBI__GCF_002213425.1:WP_088754803.1
MKFKSAIIPLTAAIGLAFAGAAHAQEVVKIAHVGPLSGPNAHMGKDNENGARMAVDELNA
KGFTIGGKKVKFELMGEDDASDPKQATAVATKLVDQKVAAVIGHLNSGTTIPASKIYSDA
GIPQVSPSATNPKYTQQGFKTTFRVVANDAQLGAALGKYAVQKLGTKQIAVIDDRTAYGQ
GVAEEFAKGAKAAGGTIVGTQFTNDKATDFNAILTSLKGKKPDVIFFGGMDAVGGPMLRQ
MKQLGIGAKFMGGDGICTGSLPGLAGDGLGEDQVICAEAGGVDASGKKGMDDFRAAYKKK
FGIDVVYNAAYAYDATMTVADAMAKAGSADPKKYLPELAKISHKGVTGVIAFDAKGDIKD
GSLTLYTYKGGQRTVLAVTK