PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_089216969.1 NCBI__GCF_900188185.1:WP_089216969.1 (393 amino acids)

SeqID: WP_089216969.1 NCBI__GCF_900188185.1:WP_089216969.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1729941: Acetyl-CoA acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_089216969.1 NCBI__GCF_900188185.1:WP_089216969.1
MRDAVIVSTARTPLTKAARGSFNNTPSPTLGAFSVKAAVERAGLEGGEIDDVVFGAAMQQ
GSQSPNVARLIALRAGLPVTVPGMSIDRQCSSGLMTIATAAKQIIVDRQDICVAGGVESI
SKVSGSGKVFIEPDAELLAMHKDTYMPMIGTAEVVAKRYNIGREAQDEYSLQSQQRTAAA
QAAGKFADEIIPCKATMAIVDKETKEVSYKDVTADRDECNRPDTTLEGLASLKPVMGEGH
TITAGNASQLSDGSSACVVMEAKVAEKRGLQPLGRYVGMAVAGTEPDEMGIGPVFAIPKL
LERFELKMDDIGLWELNEAFAVQVLYCRDKLGIPNELLNVNGGSISIGHPFGMTGARCVG
HALIEGKRRGVKYAVVTMCIGGGQGAAGLFEVF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory