PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_089322225.1 NCBI__GCF_900188395.1:WP_089322225.1 (379 amino acids)

SeqID: WP_089322225.1 NCBI__GCF_900188395.1:WP_089322225.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599952: carbamoyl-phosphate synthase small chain[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_089322225.1 NCBI__GCF_900188395.1:WP_089322225.1
MLNRKKALLALEDGTVFEGVSFGAEGEVFGEVVFTTSMTGYQEIVTDPSFKGQIVTMTCP
LIGNVGANSEDVESERPQAEGFIVKEISEIYSNWRAEFSFEEYLSKHGVVGISEIDTRAL
VKKLRDAGTMRGVISTVDLNPESLVEKALSGPKMEGLNLVDKVSCKEPYEWNKGTWVLGK
GYLERSDFKYSVAVLDFGIRKNILRNLVDAGIKPVVLPAKTPPEEILKYNPDGVFLSCGP
GDPAAVDYAIETIKYLIATFNKPIFGICLGHQLTALALGGKTYKLKFGHRGANQPVLNKK
TGKVEITAQNHGFAVSEETIPDELEITHISLNDKTVEGLKHKTKPIFTVQYHPESSPGPH
DSRYLFREFAKLIADYRGF

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory