PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_090274851.1 NCBI__GCF_900105005.1:WP_090274851.1 (746 amino acids)

SeqID: WP_090274851.1 NCBI__GCF_900105005.1:WP_090274851.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 729005: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_090274851.1 NCBI__GCF_900105005.1:WP_090274851.1
MSESTLHGLRVVSLGSGIASAAAGLHLCEAGAEVILVEPPGNPARRQEALFAVLNRGKRS
VTLDIDVPDGQQQLEQLLAAADVFIHEFTSKQAATLTLGDAQLAERFPGLIVSAITGWPK
KHPLAEAMPRETLVLARLGLLDEQPGHREGPVFVRMPFANWLASWLCVVGVMARLIARDR
DGQGGSAHTSLAQAALVPMTMHWSRAEKPTPAFAKGLDKHIPIPLHQCADGRWIHVHYSP
DKSPWMADAMAELGEAEVARLNAQWPPSHVAPNFGANRAIIATRSAQEWVEHFWQHDVSA
QIAAPFGDIYFDEQARLNGYVVEVEDATLGKTLQPGPAWKITPPARIGRSAPQPGADNGI
GFETSPKQRLITDMARQGDPLPPLHGLKVLDLGAYLAGPFACMMLADLGAEVIKVEAPAG
DAMRRLERIFSGTQRGKLGVALKLGDELSQPAVEALVRWADVVHHNMRLPAARKLQVDYD
CLKLINPQLLYCHVSAYGPTGPRADWPGFDQLMQASCGWEVEQGGAGQPPMWLRFGVGDF
FAGLSSLYVLLLGLYQRARTGEGQMVNASLLGATLLTMSEAVAREDGSVTPIAHLDATQT
GLCDTHRLYCCSDGWVAVAALAPEEAQRFHALAGADPEVHFAAQTQTEALLSLSAHDVPA
EAVLEAQLDPFLDNPDHAAAGLHTRYQHAEYGELQQIGAFWDFGDLPLSLDRPPPALGQH
SREVLGGLGIGDIELDRLAAAGVVRL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory