PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_090274943.1 NCBI__GCF_900105005.1:WP_090274943.1 (1072 amino acids)

SeqID: WP_090274943.1 NCBI__GCF_900105005.1:WP_090274943.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_090274943.1 NCBI__GCF_900105005.1:WP_090274943.1
MPLPHPLYDQNTQHHSTADELLHPDLEQQNLQQLAQKASQYYMVDEDTLMPELIQLLDHQ
PAHIKQLHQSTAVLVQRVRSQGDAVDSLDQLLQQYSLDTQEGVLLMCLAEALLRIPDSRT
AEALIRDKLSVADWKSHLGQSDSLLVNASTWGLILTKGLVKMDPRDDQPVPVLNRLVSRL
GEPVVRQVMSHAMKLMGHQFVLGRNLPEALNNGKSLFKQGYTYSFDMLGEAARTREDAQR
YFAAYLDAIERVGQANAKATAGAAAPSISIKLSALHPRYERSQRERVLKELGATLAQLVT
RARELDVAITLDAEEADRLELSLELLEQVYRQQAKGWGKLGLVVQAYSKRALPVLHWLTK
LAAEQGDEIPVRLVKGAYWDTEIKLAQIEGLPNYPVFTRKANTDIAYLACARYLLADINR
GRLFPQFATHNAHTIICLLAMAGDRPIEFQRLHGMGEALYKQALQLAPAGSYCRIYAPVG
AHKDLLPYLVRRLLENGANSSFVHQLVDEDVPVAQLCRHPLEALAGKANYRNTAIPLPHD
LYGPQRPNAKGLNLMINSQLEPLLQAMQPWNQHQWQGGPLLAAAINAAPGPTQAVTSPFD
RQQQVGQIQWTSPEQVPQALDAAVLAFPRWNAVAVTERAACLRRLADLLEMHFAELMALC
AREAGKQLKDGIAEIREAVDFCRYYADQAEQKMGQPTLLPGPTGESNELYLTGKGVFVAI
SPWNFPVAIFLGQISAAVAAGNAVLAKPAEQTSLAAHRCIELMHEAGVPRDVLQLLPGSG
KELGPLLTSDPRVVGVVFTGSTGTAQQINLGLAQRESGPLATLVAETGGQNAMLVDSTAL
PEQVVADVLESSFASAGQRCSALRVLFLQDDIADKVEELLAGAMQELKLGDPRELATDVG
PVIDAQARGKLQAHVEHYRQLGRVLAETKVPAAWSQGDFVAPVAIRLDSIDELTSEHFGP
VLHIVRYASTDVMQVVESINRSGFGLTFGIQSRNEGFAADIDKRIRVGNVYINRNMIGAV
VGVQPFGGMGLSGTGPKAGGPHYLLRFVTERTRTINTAAIGGNASLLAQGDD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory