PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_092481429.1 NCBI__GCF_900115975.1:WP_092481429.1 (508 amino acids)

SeqID: WP_092481429.1 NCBI__GCF_900115975.1:WP_092481429.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_092481429.1 NCBI__GCF_900115975.1:WP_092481429.1
MNLPMRLAEIARVSPGQEAIVFDNQRITYAQLDTRVSQLASGLQQLGVKPGDRVLTALGN
CPEMVIAYYAIIRMKGVVVPVSPQYTINELGVIVKDCLPAAVITCPQLQGTFSMINESVK
IPRGIVVNSCSTERDTFYTLEQVSSKGTDAFPEIRYSREDIAEILYTAGTSGKPKGAMLT
NYNLYSNALTFSQLCRMGPADRALLTAPAYHAGGQTCVMNNAIVAGATLVIQEGWKGAAE
LLKIIDEERITFFFGTPTMYKYILNFPDLDQYNTASLRIALTGAASTPADLYEAFYAKMK
LHLTEGYGLSETSPVVSINFISESGKKGSIGKPIPGVEVKIFDYEDREVPPGQVGEIVVR
GPNIMKGYFNREEETRWVLRNGWFHTGDLAYMDQEGYLYIVDRKKDLIIRGGVNINPKEV
EEVLYEHPGVFEVAVVGVPDALMGEEILAFIMPREGRQLEEDELKEFCRGKLAKYKIPRY
YRFVDNLPKTSSGKLMRKELQNWLNNGK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory