PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_093392426.1 NCBI__GCF_900114975.1:WP_093392426.1 (882 amino acids)

SeqID: WP_093392426.1 NCBI__GCF_900114975.1:WP_093392426.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2506131: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_093392426.1 NCBI__GCF_900114975.1:WP_093392426.1
MNVRTQIEKDGEVFEFIDLKGLCGDRLNHLPYSIRILLENLLRRQDGKLVKEHHIEKLVN
WKGEYKEPVEIPFFPTRVLMQDFTGVPAVADLAAMRDAMLRLGKDPGVVNPMVPVDLVAD
HSVQVDFYGTADAFMYNTLREYERNKERYRFLKWAQKSFDNFRMIPPGSGICHQINLEYL
SKVFWHSRKNGRVLCFPDSVVGLDSHTTMVNGIGVLGWGVGGIEAEAVLLGQPCFMTIPQ
VIGVRLVGKLPEGTTATDLVLRITRILRDYGVVEKFVEFFGPALKDLPVPTRTTIANMSP
EYGATVGFFPVDRKVVEFLYLTGRRREALITERVAPAMGLYYTGEENPEYSDVIEVDLSA
TRIAVAGPSRPMDRVELPELKKKFAEILGKDHPKRAVSVHIRGETVEISDGSVVIAAITS
CTNTSNPQVLIGAALLARNAVKKGLKVPGYVKTSFAPGSRVVISYLHNSGLLPYLEALGF
HAVAYGCTTCIGNSGPLHPEVEKAVEKHNLNVVAVLSGNRNFEARIHQKVKSNFLASPVM
VVAFALAGRVDIDFEQEPLGMDPNGMPVYLADILPDDSEIDKLVRQHIISELYEENYKHI
VDGDELWKNLSVEESVTYPWDPKSTYIQRPPFFDDFSLEVPELQDIRGARVLLWLGDSVT
TDHISPAGAIPEDYPAGQFLKSFGITPDRFNSYGARRGNHEVMMRGTFSNIRIRNKLVSE
SGGFTVKFPEKKKMFVFDAAEAYRREGVPLIVLGGKEYGTGSSRDWAAKGPKLLGVKAVI
AQSFERIHRSNLIGMGILPLQFEEGQSAESLGLDGTEEYHILGVNDIKPRKKLMVKAISD
GKEKTFYVVARLDTDVEVDYYRNGGILNYVLRKIAVTDCQQL