PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_097028688.1 NCBI__GCF_900207575.1:WP_097028688.1 (709 amino acids)

SeqID: WP_097028688.1 NCBI__GCF_900207575.1:WP_097028688.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_097028688.1 NCBI__GCF_900207575.1:WP_097028688.1
MTDKLAAWQKLAEKELKGRSPDSLTWNTLEGIPVKPLYTRADIEGLDHLDGVPGVAPFTR
GVRATMYAGRPWTIRQYAGFSTAEASNAFYRKALAAGQQGVSVAFDLATHRGYDSDHPRV
VGDVGKAGVAIDSVEDMKILFDGIPLEKISVSMTMNGAVIPILASFIVTGEEQGVPRAEL
SGTIQNDILKEFMVRNTYIYPPEPSMRIIADIIEYTAKEMPKFNSISISGYHMQEAGANL
VQELAYTLADGREYVRAAIARGMNVDEFAGRLSFFFAIGMNFFMEAAKLRAARMLWHRIM
SEFEPKKPGSLMLRTHCQTSGVSLQEQDPYNNVIRTAYEALAAALGGTQSLHTNALDEAI
ALPTEFSARIARNTQLILQEETGVTKVVDPLAGSYYVESLTNELAEKAWALIEEVEAMGG
MTKAVASGMPKLRIEESAARRQAAIDRGEDVIVGVNKYRLAKEDPIEILDIDNVAVRDAQ
IARLEKMRATRDEAACQKALDELTRRASEGGNLLEAAVDASRARASVGEISMAMEKVFGR
HRAEVKTLSGVYGAAYEGDDGFAAIQKDVETFAEEEGRRPRMLVVKMGQDGHDRGAKVIA
TAFADIGFDVDVGTLFQTPEEAAQDAIDNDVHVVGISSLAAGHKTLAPKLIEALKAQGAG
DILVICGGVIPQQDYDFLYNSGVKAIFGPGTNIPSAAKQILDLIRQARA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory