PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_100847194.1 NCBI__GCF_003031005.1:WP_100847194.1 (645 amino acids)

SeqID: WP_100847194.1 NCBI__GCF_003031005.1:WP_100847194.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597193: probable AMP-binding enzyme[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_100847194.1 NCBI__GCF_003031005.1:WP_100847194.1
MFDISTFPKADAVRRAAQLSQDDYQRLYRESIEHPSAFWAEQALRFLDWSTPWQTVQRYD
LKAGEAAWFAGGKLNVSYNCIDRHLEQRGDQTALLWEGDDPAESAQITYKKLHHHVCRLA
NVLKSRGVKKGDRVCIYMPMIPEAVYAMLACARIGAIHSVVFGGFSPDSLRDRILDADCR
TVITADEGVRGGKFVPLKQNVDKALQNCPAVSTVVVVERTQGNVDWVEGRDLWYHQAVRD
VSDDCPPEPMDAEDPLFILYTSGSTGKPKGVLHTTGGYLLQAAMTFKYVLDYRDGEVFWC
TADVGWVTGHSYIVYGPLANGATTLMFEGVPSYPNSSRFWQVIDKHKVNIFYTAPTALRA
LMREGAEPLKETSRQSLRLLGSVGEPINPEAWEWYFNVVGEQRCPIVDTWWQTETGGIML
SPLVSAQRIKPGCATQPMFGVQPVLLDEQGKEIKGAGSGVLAIKSSWPAQIRSVYGDPQR
MVDTYFKPYPGYYFTGDGARRDEDGDYWITGRIDDVINVSGHRIGTAEVESALVLHDSIA
EAAVVGYPHDVKGQGIYAFVTPMNGTEPNDELKKELLAHVSKEIGSFAKPDLIQWAPALP
KTRSGKIMRRILRKIACNELDSLGDTSTLADPSVVQGLIDKRLNQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory