PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_101444474.1 NCBI__GCF_002846395.1:WP_101444474.1 (611 amino acids)

SeqID: WP_101444474.1 NCBI__GCF_002846395.1:WP_101444474.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 1168476: Oligopeptide transport ATP-binding protein appF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_101444474.1 NCBI__GCF_002846395.1:WP_101444474.1
MSIPTPILQVTDLETTFATRQGIVRAVDKVSFALYPGEAVAIVGESGSGKTVMALSLMQL
LDTNAQVGGKAVFQSERLGAVDLLQLQEKQLQQLRGNEMGMIFQDPMSSLNPVYTCGQQV
VEVLLWHRKISKKEARERVLQLFEQAKLPRPEQIYDSYPHQISGGQKQRVIIAMAMACEP
AILIADESTTALDVTVQARMLSLIDELRVKQNMAVLFISHDLGVVAEIADRVLVMYKGRI
VEQGKVLDIFTNPQHPYTKGLLACRPTLSTKSQAKLPTVADFMEEDGQGIIREKKPQVYE
PSLADVVNAYVGTVSDIKQQRDNSQKPPLLQVQDLQVYFPIKKGIFSRTTGYVKAVDGVS
FEVKHGETIALVGESGSGKTTLGRAILRLVESTAGSVLFEGKDIASMNTKTLRQNRRHFQ
MIFQDPYTSLNPMHTVGEAILEPMRVHKLYGSDKERRGEMLELIEKVGLSPEHAQRYPQA
FSGGQRQRIAIARALALQPKLLICDESVSALDVSVQAQVLNLLNELKRDFNMTYLFITHD
LAVAKHMADRILVMHEGRIVEQGIPVQLFQNPQHDYTRSLIQAIPGGEPEAIVAAHEKRA
ALKSGIAHYQV