PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_101444719.1 NCBI__GCF_002846395.1:WP_101444719.1 (555 amino acids)

SeqID: WP_101444719.1 NCBI__GCF_002846395.1:WP_101444719.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_101444719.1 NCBI__GCF_002846395.1:WP_101444719.1
MKKSYTYTALGAICFLSGAFVMKLADDKITVDMLRSAQQMIGLNFTDAQLDSATTSVAEF
REGYQRIRKQPLANEVTPALQFNPIPVGFEFEQKREKFEVERRKGIKLPTNREELAFYSV
PQLAELVRTKQISSEELTKFFLDRLKQHGPTLQCVTSLTEELALEQARRADQEIKAGKYK
GMLHGIPYGVKDLLATKKYKTTWGSVPYKDQQIDLDATVVERLEQAGAVLVAKLTLGELA
MGDVWYGGKTRSPWDTTKGSSGSSAGSASAVSAGLLPFAIGTETLGSIVSPSTACGTTGL
RPTYGRVSRYGAMALSWSMDKIGPIARSAEDCAIVFNAIYGPDGKDLTVANAPFNYNKSI
EAKKLRVGYLHKDFERDYPFKENDKATLEALRKAGIELVPIELPNLPARDLTLTISVEGA
AAFDELTRSGRDSLMVQQHKNAWPNIFRAGRFVTAVEYLQAQRVRSLIIQQMHEQLKGID
VYLSPSFAGSNLVMTNLSGHPCVVVPNGFQKNGMPTTITFMGQLYGEAKVLALAKLYQDL
TNHDEQRPPMALSSR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory