PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_104912863.1 NCBI__GCF_002950575.1:WP_104912863.1 (1180 amino acids)

SeqID: WP_104912863.1 NCBI__GCF_002950575.1:WP_104912863.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_104912863.1 NCBI__GCF_002950575.1:WP_104912863.1
MSLTVSKSNTAQVSTKGVRGAKTLSDDCVELVHQWLDRAATLHKKPHASSQRLADLLKDP
DGPAFALGFVDRVLRPEDLTVAARALRELGQKPPAFLTGILRWLLMVGSWFAPLLPAIVV
PIARKALKTLIGHLIIDASDASLERTLKRLTKRGDQLNINLLGEAVLGAGEATKRLEGIE
RLIERRDVTYVSVKVSSVVAQLSMWSYDQTVERVVEKLVPLYEKAAATNPPTFINLDMEE
YRDLEMTLDVFQRVLGRESLHHYYGGIVMQAYLPEALDAMKRLSAFATERVAKGGAQLKV
RVVKGANLQMEQVDAALHDWPVAVLPSKQESDTNYKRVLEWSLSPERAKAIRIGVAGHNL
FDLAFSHLLATSRGVREHVDFEMLVGMAPDQADAVRETVGPLILYTPVVHSHEFDAAVGY
LVRRLDENASPENFMSAVFDLHDHSDVFAREEARFRASLDAMTQKAPTPSRTQDRTLETR
PRTLPAVDEFHNEPDTDLALPANQEWARGIYRHAASLEGQAAGLDTLQGGLISDDLGPID
GRIEIDSIVEKMRRGGKKWAARGAEGRGKILLKAAAELGVRRGEIMSVMMQEAGKTLAES
DPEISEAIDFARYYASQAVEMEQLNGAKFTPVGLTMVAPPWNFPVAIPTGSVTSALAAGS
AVIIKPAPQVRRCAAVMVEALWAAGVPKDVLHLADVSEGELGRALISHQGVDRVILTGAF
ETAALFRSWRADLPVLAETSGKNALVITPSADIDLAVADLVKSAFGHAGQKCSAASLVIL
VGSVAKSERFWRQLEDAVNTLDVGWPDARPETTMNPIIEPPGAKLRQGLTELGAGEEWLA
EPRQLDDTERLWSPGVRLGVRPGSTFHQTEYFGPLLGVMTARTLQDAVEYQNSVEYGLTA
GIHSLDPDEVSYWLDHVHAGNLYVNRGITGAIVRRQPFGGWKKSSVGPTAKAGGPNYLFG
LGSLTSAPVNRDLVGSVEDIAPEFLEVVAAAGETLTPEERESLTHALLSDQHAYSHHYGA
SVDVSEVGVERNVFRYRPFEAVVRASSLTPLVDVLRVVLAGLRTGSVVHLSSSDSLPDPV
MRVLGSPSGNRPALASVHVESELEFVERVRRNPPQRIRLLGGNANVMYVHFDGSPAVAVW
DDEVTQSGRVEMLPFVREQAVSITGHRFGAPDPRFLSLPV