PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_109939399.1 NCBI__GCF_003173335.1:WP_109939399.1 (370 amino acids)

SeqID: WP_109939399.1 NCBI__GCF_003173335.1:WP_109939399.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2501392: Probable iron chelatin transport system permease protein HP_0889]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_109939399.1 NCBI__GCF_003173335.1:WP_109939399.1
MDSVEHAPVKNNPVSSIESIRIPEIAYDLNVIKQKIHIARNVRILLFILPFAVMFWSLFI
GRYEVEPVTVVKILLSQIFPMERTWTNADETILFQVRFPRIIAAVIVGAALSMAGAAYQG
LFKNPLVSPDILGVSSGAGFGAAVAILYSTAAWMIQLSAFAGGILAVMGSYFLSKLYKSG
QILILVLSGVIISAFFGALLSITKYVADPYEKLPTIVFWLMGSLSSVRYSDIYAILPAIL
IGGSILLLIRWRINLLALSPDEAKTLGIDLKQITRVIIVCATLLTAASVCISGIIGWVGL
VVPHLGRMITGPDYKKLLPLTIVMGSSYLLVMDDLSRTLIATEIPLGILTALLGAPFFAY
LLWRRKTGWA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory