PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_110204929.1 NCBI__GCF_003194585.1:WP_110204929.1 (395 amino acids)

SeqID: WP_110204929.1 NCBI__GCF_003194585.1:WP_110204929.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 33518635: Acetyl-CoA acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_110204929.1 NCBI__GCF_003194585.1:WP_110204929.1
MSGSVIVAGARTPVGRLLGGLKDLSAADLGGVAIKGALEKAGISGDQVDYVVMGHVIQAG
AGQITARQAAVKGGIPMGVPSLTINKVCLSGINAIALADQLIRAGEHEIVVAGGMESMTQ
APHLLPKSREGFKYGDTKLVDSMAYDALYDQFTDQAMGNLTEQCNVAGGNLTREEQDAFS
ARSHQLAAAAQKNGVFDDEIVPVTISSRRGDVVVSVDEGVRGDTTAESLGGLRPAFAKDG
TITAGSSSQISDGACAVVVMSKAKAEELGLEWLAEIGASGQVAGPDSTLQLQPARAIAKA
VEKEGIAVSDIDLFELNEAFAAVGIESARELGVSEDKVNVNGGAIAIGHPVGMSGARIVL
HLALELKRRGGGIGAAALCGGGGQGDALIVRVPKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory