PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_110805920.1 NCBI__GCF_003217355.1:WP_110805920.1 (1127 amino acids)

SeqID: WP_110805920.1 NCBI__GCF_003217355.1:WP_110805920.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_110805920.1 NCBI__GCF_003217355.1:WP_110805920.1
MTDLSALGPQAKFAPEAEVLEALVAQAALPQAQLDRIAARGADLVARIRAEAKPSLMEHF
LAQYGLSTREGVALMCLAEAMLRVPDNATIDALIEDKIAPSDWGKHLGTAASSLVNASTW
ALMLTGKVLDDGAGGLAGTLRGAMRRLGEPVIRAAVGQAMREMGRQFVLGETIEKALERA
EKRESEGYTFSYDMLGEAALTTADAERYRVAYAQAIASIAKAATKGSIAANPGISIKLSA
LHPRYEVAQEARVMAELVPVVRDLARAAAAAGIALHIDAEEQDRLALSLRVIEAVMADPE
TAGWQGFGAVVQAYGKRAGAAIDALAAMARASGRRINIRLVKGAYWDSEMKRAQVEGHPG
FPLFTSKTGTDVAYICLAAKLFGLSDCLYPQFATHNAHTVAAVLEMAAGRPYEFQRLHGM
GARLHDIVLRETGGRCRIYAPVGAHRDLLAYLVRRLLENGANSSFVNQIVNESVPPSEVA
ACPFAALATARAPRGLLAPAALFGSDRVNSQGFDLSDPEVLARIETARTVTLPDAAPIVA
GPVSGGSRDVVNPATGAVVARVTEADAATVAVALDAARVWSAPAAERAAVLSRAADLYEE
NFGPIFAALAREAGKTLGDAISELREAVDFLRYYAAEGTSDTRAPRGPVVAISPWNFPLA
IFTGQIAAALMAGNAVLAKPAEQTPVIAALAVRLLHQAGVPATALQLLPGDGPTVGAALT
RDPRIKGVVFTGSTETAQIIARAMAAHMAPGTPLIAETGGLNAMVVDSTALPEQAVRDVV
ASAFRSAGQRCSALRCLYVQEDIAPHVIAMLKGAMDELVLGDPWRLSTDVGPVIDAEAQA
GIETYLAQNAGRILHRTAAPAGGHFVAPALLKVTGIADLSHEIFGPVLHLATFAADDLPA
VIAAINARGYGLTFGLHSRIDARVETVAETIRAGNIYVNRNQIGAVVGSQPFGGEGLSGT
GPKAGGPLYLGRFYAPEPVVATGAWTQAVTPVLPEAVETLLGELFLPGPTGELNRLTRHV
RGPVLCLGPGPEAAAAQAAAVAVLGGQAVQATGAVAAKALGTAEPLAAVLWWGEAEMGRA
YAQALAARPGPLVPLITARPDLAHVAHERHLCVDTTAAGGNAALLAG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory