PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_110806919.1 NCBI__GCF_003217355.1:WP_110806919.1 (717 amino acids)

SeqID: WP_110806919.1 NCBI__GCF_003217355.1:WP_110806919.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 585455: Malate synthase G]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_110806919.1 NCBI__GCF_003217355.1:WP_110806919.1
MTERVEREGLQVAAELATFIEAQALPGTGVDPARFWAGFSALIHEFGPKNRALLEKRDQM
QARIDAWHLHNRGQGHDATAYRAFLDEIGYLAPEGPDFVIETGPTDAEIASVCGPQLVVP
ITNARYALNAANARWGSLYDALYGTDALGTPPAAPGYDPVRGAKVIAWAKEFLDTACPLV
AGSWAQATRLWAQDGGLFADVAGEETGLKDPAQFAGTRGPAEAPAEILLRNNGLHLILKR
DPAHPIGASDPLGLADLVLESALSSIMDCEDSVATVDATDKVLAYTNWLGLMRGDLTETV
TKGGRSFTRALAPDLTFTAPEGGSVTLKGRALMLVRNVGPLMTTPAILCRSGAEAPEGLM
DAMITTLCALHDLKRGANSTTGSVYVVKPKLHGPEEVAFTCATFAHVEEVLGLPANTVKL
GIMDEERRTSANLKECIRAAKDRLAFINSGFLDRTGDEIFTSMEAGPMVTKAEMKSQPWI
SAYEDRNVDIGLRCGLPGKAQIGKGMWAAPDAMAEMLAQKIAHPMAGANCAWVPSPTAAV
LHATHYHRVDVKARQREIAQLQRPLRLFDLLTIPLAAGRTYSEAEITAEIENNAQGILGY
VVRWVDQGIGCSKVPDIHDVGLMEDRATLRISSQALANWLHHGICGEPQVMKAFRKMAAV
VDRQNAGDPAYQPMGPYFDGLAFQAACDLVFLARIQSSGYTEPVLHQRRAQVKAAKA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory