PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_111606228.1 NCBI__GCF_003259225.1:WP_111606228.1 (694 amino acids)

SeqID: WP_111606228.1 NCBI__GCF_003259225.1:WP_111606228.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 20141685: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_111606228.1 NCBI__GCF_003259225.1:WP_111606228.1
MSQSPVVQSPVARSPVLQSFIAGEWLGNQAGQALASPVNGETIYHTHAETIDFARSLEFA
RTKGRASLMAMDFQSRASCLRDLGKHLLEYKESLYAISLLTGATRNDSWVDIEGGAGTLF
AYASVGRRELPSGNLIHEDDAFPLGRDGQFFGSHILVPRQGVAVHINAFNFPIWGMLEKF
AANFLAGMPCIVKPATSTSYLTEACVRLMHESGLLPEGSLQLIIGRTGDLLDRLDGQDVV
TFTGSASTAAKLKVTPNIINNSIPFNAEADSLNCAILAPDVSVDSPEFELFIKEVAREMT
VKAGQKCTAIRRVLIPENQVQAVSERLTARLAKMSIGDPHLDTVRMGALASFEQKADVLA
QLEQLLKSSQLVCGHDEGFELLGKGSEKGAFIQPTLLLSNDPDADGGAHDIEAFGPISTL
MPYKNIDHAIALAARGKGSLVTTLVTQDPEIARKVVPALAAWHGRVHILNEASSKESTGH
GSPLPMLKHGGPGRAGGGEELGGIRGVKHYMQRAAIQGSPTMLSAVTGEYVRGGETYESD
VHPFRRYFEDLRIGESLLTHRRTVTETDIVNFGCLSGDHFYMHFDDIAARDSQFEQRIAH
GYFVLSAAAGLFVSPGEGPVLANYGLDTLRFITPVPIGDTIRARLTCKRKIDQGKLSPKG
EPQGVVVWDVQVTNQHEELVASYDILTLVKKQFD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory