PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_111609067.1 NCBI__GCF_003259225.1:WP_111609067.1 (614 amino acids)

SeqID: WP_111609067.1 NCBI__GCF_003259225.1:WP_111609067.1
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_111609067.1 NCBI__GCF_003259225.1:WP_111609067.1
MPIYRSKTTTSGRNMAGARALWRATGMTDDDFQKPIIAVVNSFTQFVPGHVHLKDMGQLV
AREIEAAGGVAKEFNTIAVDDGIAMGHDGMLYSLPSRDLIADSVEYMVNAHCADAMVCIS
NCDKITPGMLMAAMRLNIPVIFVSGGPMEAGKTKLSENKLDLVDAMVIAADPTATDEKVA
EYERSACPTCGSCSGMFTANSMNCLTEALGLSLPGNGTTLATHSDRRRLFLEAGRRIVDI
TKRFYENDEANWAPRSIASFEAFENAMTLDIAMGGSTNTILHLLAIAHEAGVDFTMKDID
RLSRKVPQLCKVAPNSPKYHVEDVHRAGGIFALLGELDRAGILHNQCHTVHSKTMEEALE
TWDIMRSPTPEVIEFYKAGPAGIPTQTAFSQSTRWPSLDGDRAEGCIRSIENAFSIEGGL
AVLYGNIAVDGCVVKSAGVDESILVFEGRAHVTESQDEAVKNILDDKVEAGDIVIVRYEG
PKGGPGMQEMLYPTSYIKSKGLGKACALLTDGRFSGGTSGLSIGHVSPEAAAGGAIGLVE
NGDRILIDIPNRTINVLLSDEELQNRRDAMNAKGANAWKPVEERPRKVSPALKVYAHFAT
SADKGAVRDISQID

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory