PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on WP_200770547.1 NCBI__GCF_900141795.1:WP_200770547.1 (422 amino acids)

SeqID: WP_200770547.1 NCBI__GCF_900141795.1:WP_200770547.1
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            CytoplasmicMembrane           [matched PS00714: NA_DICARBOXYL_SYMP_2 Pattern - Cytoplasmic Membrane]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121462: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>WP_200770547.1 NCBI__GCF_900141795.1:WP_200770547.1
MKLALHWQILLALALAVLMGWLTGTDATILGVHWIAIYDFIGTLFLNALKMVVVPLVMAA
IITGMASIARQGGFGRLGLKTLGYYLMTSAIAILIGITLVNLIQPGVSDNPPPQIAADTQ
LQQKLEGRDIGDIAEVFLRMIPTNIVEAAAETQMLGLIFFSLLFGYFMMKIQTPYRDTLY
NFWQGVFEVMMQITEWVMKFAPLGVFGLVAASVARTGFDQFANLALFFITVVLALGIHFF
VVMPLILRFIGGVRNPWKHYKVMLPAILTAFSTSSSASTLPVTIECVERGAGVPNRISGF
VLPLGATVNMDGTALYEAVAALFIAQLFGVHLDVTQQFMIIVIALLTSIGVAGIPSASLV
AISIILVSVGLPAEAIGLLLVVDRLLDMMRTTVNIFSDSVGAVVIARSEGEKDVLEGDGR
CG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory