SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 10307912_189_353 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
33% identity, 39% coverage: 3:67/165 of query aligns to 45:118/240 of 4qhzC

query
sites
4qhzC
I
 
I
A
 
V
L
 
L
F
 
F
D
 
D
G
 
G
E
 
K
T
 
D
L
 
L
F
 
S
G
 
A
W
 
W
K
 
E
A
 
S
Y
 
V
S
 
K
-
 
G
-
 
G
K
 
A
A
 
A
N
 
E
W
 
W
A
 
D
V
 
V
K
 
H
E
 
D
G
 
G
A
 
V
I
 
F
T
 
T
V
 
V
S
 
N
E
 
K
G
 
-
E
 
K
K
 
K
G
 
G
L
 
D
L
 
I
C
 
Q
T
 
T
H
 
K
V
 
Q
Q
 
K
F
 
F
S
 
N
D
 
D
Y
 
F
E
 
Q
L
 
M
R
 
H
L
 
I
D
 
E
Y
 
W
Q
 
Q
-
 
V
-
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
A
 
S
T
 
Q
P
 
S
E
 
R
T
 
G
N
|
N
S
|
S
G
 
G
I
 
I
F
 
F
L
 
L
R
 
Q

Sites not aligning to the query:

Query Sequence

>10307912_189_353
GWIALFDGETLFGWKAYSKANWAVKEGAITVSEGEKGLLCTHVQFSDYELRLDYQATPET
NSGIFLRTPTVAELEDVTTRCYELNIAPPSNGFPTGSLVGREKAEGIVTDNAWHTLHVTL
LGDKVTVKHDDKELYTYTDKMPPGRGYIGLQLNSGAIAFKNVHLK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory