SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 10307912_359_538 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
26% identity, 99% coverage: 2:180/180 of query aligns to 47:237/240 of 4qhzC

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4qhzC
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Query Sequence

>10307912_359_538
PIFNGKDLTGWSQPEGSKSEFSVSEDGLLKVKNGRGALESDGAYGDFVLQLECMTHAKEL
NSGIFFRSIPKELTNGYESQIHNGYKNGDRTQPVDHGTGAIFRRVNARLVVADDLAWLYK
TVVADGANIEVWVNGYPVTAWTDERKADKNPRNGLRTEAGTLQIQGHDPTTDLSFRNIKI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory