SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 10356898_71_256 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
37% identity, 99% coverage: 2:186/186 of query aligns to 46:238/240 of 4qhzC

query
sites
4qhzC
I
 
V
L
 
L
F
 
F
D
 
D
G
 
G
S
 
K
T
 
D
L
 
L
E
 
S
Q
 
A
F
 
W
N
 
E
P
 
S
S
 
V
K
 
K
-
 
G
-
 
G
-
 
A
-
 
A
-
 
E
W
 
W
K
 
D
I
 
V
V
 
H
D
 
D
G
 
G
N
 
V
L
 
F
V
 
T
A
 
V
G
 
N
P
 
K
-
 
K
-
 
K
G
 
G
G
 
D
L
 
I
Q
 
Q
S
 
T
K
 
K
K
 
Q
A
 
K
Y
 
F
G
 
N
D
 
D
L
 
F
Q
 
Q
M
 
M
H
 
H
L
 
I
E
 
E
W
 
W
R
 
Q
T
 
V
P
 
P
D
 
T
P
 
N
K
 
I
L
 
T
A
 
G
L
 
-
K
 
-
K
 
E
P
 
S
N
 
Q
N
 
S
M
 
R
G
 
G
N
|
N
N
x
S
G
 
G
L
 
I
K
 
F
L
 
L
M
 
Q
G
 
G
H
 
M
Y
 
Y
E
|
E
I
 
V
Q
|
Q
I
 
V
F
 
L
D
 
D
S
 
C
Y
 
Y
T
 
N
C
 
N
R
 
P
I
 
T
Y
 
Y
A
 
V
D
 
N
G
 
G
S
 
Q
A
 
T
G
 
G
A
 
S
V
 
I
Y
 
Y
A
 
K
Q
 
Q
T
 
S
P
 
I
P
 
P
A
 
L
V
 
A
N
 
N
V
 
A
C
 
M
R
 
R
K
 
K
P
 
P
G
 
G
E
 
E
W
 
W
Q
 
N
T
 
V
F
 
Y
D
 
D
I
 
I
Y
 
I
F
 
Y
T
 
T
A
 
A
P
 
P
V
 
T
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F
-
 
K
E
 
E
N
 
D
E
 
G
K
 
S
L
 
Y
V
 
R
Q
 
T
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H
G
 
P
Y
 
T
V
 
V
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T
V
 
V
L
 
I
H
 
Q
N
 
N
G
 
G
V
 
V
F
 
V
I
 
L
H
 
Q
H
 
N
N
 
H
T
 
T
E
 
T
I
 
I
L
 
L
G
 
G
K
 
T
T
 
T
A
 
-
H
 
-
K
 
-
K
 
-
E
 
E
Q
 
W
V
 
I
Y
 
G
V
 
F
P
 
P
H
 
Q
A
 
V
A
 
K
R
 
K
M
 
H
-
 
G
-
 
A
-
 
G
P
 
P
F
 
I
Y
 
I
F
 
L
A
x
Q
G
 
S
H
 
H
G
 
G
S
 
D
P
 
P
V
 
S
E
 
E
-
 
P
-
 
I
-
 
S
F
 
F
R
 
R
N
 
N
I
 
I
W
 
W
I
 
I
R
 
R

Query Sequence

>10356898_71_256
EILFDGSTLEQFNPSKWKIVDGNLVAGPGGLQSKKAYGDLQMHLEWRTPDPKLALKKPNN
MGNNGLKLMGHYEIQIFDSYTCRIYADGSAGAVYAQTPPAVNVCRKPGEWQTFDIYFTAP
VFENEKLVQPGYVTVLHNGVFIHHNTEILGKTAHKKEQVYVPHAARMPFYFAGHGSPVEF
RNIWIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory