SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 10359233_256_442 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
26% identity, 98% coverage: 4:187/187 of query aligns to 47:238/240 of 4qhzC

query
sites
4qhzC
L
 
L
F
 
F
A
 
D
T
 
G
G
 
K
D
 
D
F
 
L
S
 
S
N
 
A
W
 
W
T
 
E
N
 
S
P
 
V
K
 
K
G
 
G
G
 
G
P
 
-
V
 
-
G
 
A
K
 
A
G
 
E
W
 
W
S
 
D
I
 
V
E
 
H
N
 
D
G
 
G
I
 
V
V
 
F
H
 
T
R
 
V
G
 
N
A
 
K
Q
 
K
A
 
K
W
 
G
G
 
D
L
 
I
N
 
Q
T
 
T
K
 
K
K
 
Q
Q
 
K
Y
 
F
K
 
N
D
 
D
F
 
F
E
 
Q
L
 
M
R
 
H
F
 
I
D
 
E
W
 
W
K
 
Q
I
 
V
S
 
P
E
 
T
A
 
N
G
 
I
N
 
T
S
 
G
G
 
E
V
 
S
K
 
Q
Y
 
S
R
 
R
A
 
G
Y
x
N
G
x
S
G
 
G
L
 
I
G
 
F
L
 
L
-
 
Q
-
 
G
-
 
M
-
 
Y
E
|
E
Y
 
V
Q
|
Q
I
 
V
L
 
L
D
 
D
D
 
-
A
 
-
K
 
C
H
 
Y
N
 
N
D
 
N
R
 
P
H
 
T
K
 
Y
P
 
V
N
 
N
H
 
G
R
 
Q
A
 
T
G
 
G
S
 
S
L
 
I
Y
 
Y
E
 
K
L
 
Q
V
 
-
A
 
S
A
 
I
P
 
P
D
 
L
D
 
A
K
 
N
P
 
A
L
 
M
K
 
R
P
 
K
A
 
P
G
 
G
Q
 
E
W
 
W
N
 
N
H
 
V
G
 
Y
R
 
D
I
 
I
I
 
I
-
 
Y
-
 
T
-
 
A
-
 
P
-
 
T
-
 
F
-
 
K
A
 
E
N
 
D
G
 
G
N
 
S
H
 
Y
L
 
R
E
 
T
H
 
H
W
 
P
L
 
T
-
 
V
-
 
T
-
 
V
-
 
I
-
 
Q
N
 
N
G
 
G
V
 
V
K
 
V
V
 
L
V
 
Q
-
 
N
-
 
H
E
 
T
I
 
T
E
 
I
Y
 
L
G
 
G
S
 
T
E
 
T
D
 
E
W
 
W
Q
 
-
Q
 
-
R
 
-
F
 
-
S
 
-
Q
 
-
S
 
I
K
 
G
Y
 
F
K
 
P
Q
 
Q
H
 
V
K
 
K
G
 
K
F
 
H
G
 
G
S
 
A
W
 
-
T
 
-
G
 
G
S
 
P
I
 
I
H
 
I
L
 
L
Q
|
Q
D
 
S
H
 
H
N
 
G
D
 
D
-
 
P
-
 
S
-
 
E
E
 
P
V
 
I
W
 
S
F
 
F
K
 
R
N
 
N
V
 
I
Q
 
W
I
 
I
R
 
R

Query Sequence

>10359233_256_442
FEDLFATGDFSNWTNPKGGPVGKGWSIENGIVHRGAQAWGLNTKKQYKDFELRFDWKISE
AGNSGVKYRAYGGLGLEYQILDDAKHNDRHKPNHRAGSLYELVAAPDDKPLKPAGQWNHG
RIIANGNHLEHWLNGVKVVEIEYGSEDWQQRFSQSKYKQHKGFGSWTGSIHLQDHNDEVW
FKNVQIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory