SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 11036133_59_263 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
24% identity, 99% coverage: 4:205/205 of query aligns to 46:238/240 of 4qhzC

query
sites
4qhzC
L
 
V
L
 
L
F
 
F
D
 
D
G
 
G
N
 
K
S
 
D
K
 
L
S
 
S
N
 
A
F
 
W
H
 
E
V
 
-
F
 
-
N
 
S
K
 
V
K
 
K
S
 
G
D
 
G
G
 
A
A
 
A
A
 
E
W
 
W
Q
 
D
I
 
V
A
 
H
D
 
D
G
 
G
A
 
V
L
 
F
H
 
-
L
 
-
D
 
-
T
 
T
A
 
V
N
 
N
K
 
K
K
 
K
D
 
K
G
 
G
K
 
-
I
 
-
T
 
-
G
 
-
G
 
-
G
 
-
D
 
D
L
 
I
V
 
Q
T
 
T
N
 
K
D
 
Q
E
 
K
Y
 
F
D
 
N
N
 
D
F
 
F
D
 
Q
L
 
M
K
 
H
L
 
I
E
 
E
W
 
W
K
 
Q
I
 
V
S
 
P
-
 
T
-
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
A
 
S
G
 
R
G
 
G
N
|
N
S
|
S
G
 
G
I
 
I
L
 
F
F
 
L
Y
 
Q
V
 
G
Q
 
M
E
 
Y
G
 
-
P
 
-
K
 
-
F
 
-
G
 
-
E
 
-
T
 
-
Y
 
-
H
 
-
T
 
-
G
 
-
P
 
-
E
|
E
M
 
V
Q
|
Q
V
 
V
L
 
L
D
 
D
N
 
C
A
 
Y
A
 
N
H
 
N
P
 
P
D
 
-
A
 
-
K
 
T
I
 
Y
I
 
V
K
 
N
H
 
G
R
 
Q
A
 
T
G
 
G
D
 
S
L
 
I
Y
 
Y
D
 
K
L
 
Q
I
 
S
T
 
I
S
 
P
T
 
L
P
 
A
E
 
N
T
 
A
V
 
M
K
 
R
P
 
K
A
 
P
G
 
G
E
 
E
W
 
W
N
 
N
Q
 
V
V
 
Y
E
 
D
I
 
I
I
 
I
-
 
Y
-
 
T
-
 
A
-
 
P
-
 
T
-
 
F
S
 
K
N
 
E
K
 
D
G
 
G
A
 
S
L
 
Y
E
 
R
F
 
T
H
 
H
L
 
P
N
 
T
G
 
V
T
 
T
K
 
V
V
 
I
V
 
Q
S
 
N
T
 
G
T
 
V
L
 
V
W
 
L
D
 
Q
D
 
N
A
 
H
W
 
-
K
 
T
K
 
T
M
 
I
V
 
L
A
 
G
A
 
T
S
 
T
K
 
E
F
 
W
K
 
I
Q
 
G
W
 
F
P
 
P
G
 
Q
F
 
V
G
 
K
T
 
K
Y
 
H
K
 
G
T
 
A
G
 
G
H
 
P
I
 
I
A
 
I
L
 
L
Q
|
Q
D
 
S
H
 
H
G
 
G
N
 
D
-
 
P
-
 
S
-
 
E
A
 
P
V
 
I
W
 
S
Y
 
F
R
 
R
N
 
N
I
 
I
R
 
W
I
 
I
K
 
R

Query Sequence

>11036133_59_263
GWQLLFDGNSKSNFHVFNKKSDGAAWQIADGALHLDTANKKDGKITGGGDLVTNDEYDNF
DLKLEWKISAGGNSGILFYVQEGPKFGETYHTGPEMQVLDNAAHPDAKIIKHRAGDLYDL
ITSTPETVKPAGEWNQVEIISNKGALEFHLNGTKVVSTTLWDDAWKKMVAASKFKQWPGF
GTYKTGHIALQDHGNAVWYRNIRIK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory