SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 11127748_199_365 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
32% identity, 99% coverage: 2:167/167 of query aligns to 45:237/240 of 4qhzC

query
sites
4qhzC
I
 
I
N
 
V
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L
F
 
F
N
 
D
G
 
G
K
 
K
N
 
D
L
 
L
D
 
S
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A
W
 
W
H
 
E
A
 
S
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V
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K
S
 
G
-
 
G
E
 
A
N
 
A
Q
 
E
W
 
W
V
 
D
V
 
V
K
 
H
D
 
D
G
 
G
I
 
V
L
 
F
S
 
T
S
 
V
P
 
N
K
 
K
T
 
K
G
 
K
A
 
G
N
 
D
L
 
I
I
 
Q
T
 
T
N
 
K
E
 
Q
K
 
K
F
 
F
D
 
N
D
 
D
F
 
F
K
 
Q
L
 
M
L
 
H
V
 
I
E
 
E
F
 
W
R
 
Q
Y
 
V
P
 
P
K
 
T
G
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
-
 
S
-
 
R
S
 
G
N
|
N
S
|
S
G
 
G
L
 
I
Y
 
F
L
 
L
R
 
Q
G
 
G
R
 
M
Y
 
Y
E
|
E
L
 
V
Q
|
Q
I
 
V
Q
 
L
D
 
-
D
 
D
I
 
C
G
 
Y
Q
 
N
E
 
N
P
 
P
S
 
T
-
 
Y
-
 
V
N
 
N
I
 
G
L
 
Q
Y
 
T
G
 
G
G
 
S
I
 
I
Y
 
Y
G
 
K
F
 
Q
L
 
S
T
 
I
P
 
P
N
 
L
E
 
A
M
 
N
A
 
A
A
 
M
K
 
R
P
 
K
A
 
P
G
 
G
E
 
E
W
 
W
Q
 
N
T
 
V
Y
 
Y
E
 
D
I
 
I
T
 
I
L
 
Y
I
 
T
G
 
A
-
 
P
-
 
T
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F
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K
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E
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D
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G
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S
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Y
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R
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T
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H
R
 
P
R
 
T
L
 
V
T
 
T
V
 
V
V
 
I
A
 
Q
N
 
N
G
 
G
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V
K
 
V
I
 
L
I
 
Q
N
 
N
D
 
H
Q
 
T
I
 
T
I
 
I
P
 
L
G
 
G
I
 
T
T
 
T
G
 
E
-
 
W
-
 
I
G
 
G
A
 
F
L
 
P
D
 
Q
S
 
V
K
 
K
E
 
K
G
 
H
L
 
G
P
 
A
G
 
G
P
 
P
I
 
I
V
 
I
L
 
L
Q
|
Q
G
 
-
D
 
S
H
 
H
G
 
G
-
 
D
-
 
P
-
 
S
-
 
E
P
 
P
V
 
I
D
 
S
F
 
F
R
 
R
K
 
N
I
 
I
L
 
W
I
 
I

Query Sequence

>11127748_199_365
PINIFNGKNLDGWHADKSENQWVVKDGILSSPKTGANLITNEKFDDFKLLVEFRYPKGSN
SGLYLRGRYELQIQDDIGQEPSNILYGGIYGFLTPNEMAAKPAGEWQTYEITLIGRRLTV
VANGKKIINDQIIPGITGGALDSKEGLPGPIVLQGDHGPVDFRKILI

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory