SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 11129142_59_261 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
26% identity, 99% coverage: 3:203/203 of query aligns to 45:238/240 of 4qhzC

query
sites
4qhzC
M
 
I
L
 
V
L
 
L
F
 
F
D
 
D
G
 
G
V
 
K
N
 
D
T
 
L
D
 
S
G
 
A
W
 
W
R
 
E
A
 
S
F
 
V
N
 
K
G
 
G
D
 
G
T
 
A
L
 
A
P
 
-
P
 
-
N
 
E
W
 
W
T
 
D
V
 
V
E
 
H
D
 
D
G
 
G
A
 
V
L
 
F
K
 
T
G
 
-
L
 
V
G
 
N
H
 
K
D
 
K
G
 
K
G
 
G
D
 
D
V
 
I
G
 
Q
G
 
-
D
 
-
I
 
-
V
 
-
F
 
-
A
 
T
P
 
K
L
 
Q
E
 
K
F
 
F
E
 
N
Q
 
D
F
 
F
E
 
Q
M
 
M
E
 
H
F
 
I
T
 
E
W
 
W
K
 
Q
I
 
V
A
 
P
T
 
T
G
 
N
-
 
I
-
 
T
-
 
G
-
 
E
-
 
S
-
 
Q
-
 
S
-
 
R
G
 
G
N
|
N
S
|
S
G
 
G
V
 
I
F
 
F
Y
 
L
H
 
Q
V
 
G
V
 
M
E
 
Y
D
 
-
P
 
-
K
 
-
Y
 
-
A
 
-
A
 
-
P
 
-
Y
 
-
Y
 
-
T
 
-
G
 
-
P
 
-
E
|
E
Y
 
V
Q
|
Q
V
 
V
I
 
L
D
 
D
Q
 
C
L
 
Y
G
 
N
F
 
N
P
 
P
Q
 
T
P
 
Y
L
 
V
E
 
N
D
 
G
W
 
-
Q
 
-
S
 
Q
L
 
T
A
 
G
G
 
S
D
 
I
Y
 
Y
A
 
K
M
 
Q
Y
 
S
V
 
I
P
 
P
D
 
L
F
 
A
E
 
N
G
 
A
V
 
M
V
 
R
K
 
K
P
 
P
A
 
-
G
 
G
E
 
E
W
 
W
N
 
N
V
 
V
S
 
Y
K
 
D
I
 
I
I
 
I
F
 
Y
T
 
T
-
 
A
-
 
P
-
 
T
-
 
F
N
 
K
E
 
E
K
 
D
A
 
G
E
 
S
Y
 
Y
Y
 
R
L
 
T
N
 
H
G
 
P
K
 
T
K
 
V
T
 
T
V
 
V
-
 
I
E
 
Q
F
 
N
V
 
G
P
 
V
Y
 
V
S
 
L
E
 
Q
D
 
N
W
 
H
N
 
T
T
 
T
K
 
I
R
 
L
N
 
G
S
 
T
G
 
T
K
 
E
W
 
W
D
 
I
D
 
G
F
 
F
T
 
P
D
 
Q
Y
 
V
A
 
K
I
 
K
S
 
H
K
 
G
S
 
A
G
 
G
L
 
P
I
 
I
A
 
I
L
 
L
Q
|
Q
D
 
S
H
 
H
G
 
G
-
 
D
-
 
P
-
 
S
S
 
E
E
 
P
V
 
I
W
 
S
F
 
F
K
 
R
N
 
N
I
 
I
K
 
W
I
 
I
R
 
R

Query Sequence

>11129142_59_261
GWMLLFDGVNTDGWRAFNGDTLPPNWTVEDGALKGLGHDGGDVGGDIVFAPLEFEQFEME
FTWKIATGGNSGVFYHVVEDPKYAAPYYTGPEYQVIDQLGFPQPLEDWQSLAGDYAMYVP
DFEGVVKPAGEWNVSKIIFTNEKAEYYLNGKKTVEFVPYSEDWNTKRNSGKWDDFTDYAI
SKSGLIALQDHGSEVWFKNIKIR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory