SitesBLAST – Find functional sites

 

SitesBLAST

Comparing 11231190_33_234 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

4qhzC Crystal structure of a putative glycosyl hydrolase (bdi_3914) from parabacteroides distasonis atcc 8503 at 2.13 a resolution
29% identity, 99% coverage: 3:202/202 of query aligns to 46:238/240 of 4qhzC

query
sites
4qhzC
V
 
V
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L
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D
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A
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C
 
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-
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E
A
 
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V
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K
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G
-
 
G
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A
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A
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E
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W
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D
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V
E
 
H
D
 
D
G
 
G
T
 
-
L
 
V
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F
M
 
T
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V
G
 
N
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K
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K
G
 
K
G
 
G
D
 
D
I
 
I
I
 
Q
T
 
T
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K
E
 
Q
K
 
K
Y
 
F
S
 
N
D
 
D
F
 
F
E
 
Q
L
 
M
V
 
H
F
 
I
E
 
E
F
 
W
N
 
Q
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V
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P
A
 
T
N
 
N
-
 
I
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T
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G
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E
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S
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Q
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S
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R
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G
N
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N
S
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S
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I
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F
V
 
L
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M
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Y
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-
M
 
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E
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E
Y
 
V
Q
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V
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L
D
 
D
D
 
C
Y
 
Y
N
 
N
Y
 
-
E
 
-
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-
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-
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-
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N
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P
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Y
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N
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G
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Q
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T
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G
A
 
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I
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Y
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A
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R
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I
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Q
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N
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G
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V
K
 
V
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L
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H
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T
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T
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-
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I
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L
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T
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T
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E
E
 
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G
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F
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Q
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V
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K
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A
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x
Q
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H
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G
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D
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P
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S
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F
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R
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N
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I
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W
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I
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R

Query Sequence

>11231190_33_234
YEVLFDGKSLEKWCPKNAPTSAIKGWKIEDGTLFMDGKGGGDIITKEKYSDFELVFEFNL
TANANSGIKYFVDTIYNEKTGKMMVNGPEYQIIDDYNYEGVKDNPNGTTSTGAAYLFYPP
KNKELKPHGSWNQGKIIAKGKKVSHYLNGKKLVSYTRGNKDFLKKKSENKFKDDENYGEL
KEGHILITDHGDKVFFRNIKIK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory